Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq71 127 3e-24 >seq71 Length=86954 Score = 127 bits (140), Expect = 3e-24 Identities = 301/440 (68%), Gaps = 20/440 (5%) Strand=Plus/Plus Query 180541 TTTTCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCAGGAGC 180600 || |||| |||| ||| || || ||||| ||||| ||||||||||||||| || Sbjct 85546 TTATCGAGAAGAGAATGACTTGGGTCCAATATATGGTTTTCAATGGAGACATTTTAATGC 85605 Query 180601 TCAATATATTGACTGTG-ATACCAACTATATCGGGCAAGGTATAGACCAATTAAGCCAAG 180659 |||||| ||| || || || |||| |||||||| |||| |||||| | || Sbjct 85606 AGAATATAA-GACAATGCATGATAATTATAATGGGCAAGGAGTAGATCAATTAT-CAAAT 85663 Query 180660 TTA-TAGAAACTATAAAAAATAATCCCGAATGCCGAAGAATAATCATAGATAGTTGGAAT 180718 ||| | ||| | | || || ||||| | ||||| ||| || | |||||| Sbjct 85664 TTAATTGAATCACTTAAGAAAAATCCTTATGATAGAAGACATATCTTATCTGCATGGAAT 85723 Query 180719 GTATCA-CAATTACCAGATATGGCTCTTCCACCATGTCACTGTTTGGTACAATTTTATGT 180777 ||| |||| | | ||||||| | ||||| ||||| || ||||||||||| Sbjct 85724 CCATCTGCAATGAA-ATATATGGCATTACCACCTTGTCATATATTATCTCAATTTTATGT 85782 Query 180778 TAGAAATAA-AATTTATTTAGATTGCCAATTGTATCAAAGATCTGCAGATTTAGGATTAG 180836 | ||||| ||| ||| || |||| ||| ||||||||| | |||||||| |||| Sbjct 85783 TGATAATAATAATAGATTAAG-TTGCTCATTATATCAAAGAAGTTGTGATTTAGGTTTAG 85841 Query 180837 G-TGTACCATATAATATTGCTTTCTATTCATTTTTGGTATGTGTTCT-----CTCAAAGT 180890 | ||| |||| ||||||||| | |||||||| | |||||||| | |||| | Sbjct 85842 GATGT-CCATTTAATATTGCATCTTATTCATTAT---TATGTGTTATGATTGCTCATATA 85897 Query 180891 GGTGCAATTTAACCCCTGGAAAATTTATTCACACTTTTGGGGATGTTCATGTATATTCTA 180950 ||| | | || |||||| ||||||| || | |||| |||| |||| | ||| | Sbjct 85898 TGTGGATATGAA--CCTGGAGAATTTATACATTTTATTGGTGATGCTCATATTTATGAAA 85955 Query 180951 ACCATATTGACCAATTAAAA 180970 | ||| |||| ||||||||| Sbjct 85956 ATCATGTTGAGCAATTAAAA 85975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655278894215000