Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq61 136 9e-27 seq50 129 1e-24 seq83 84.2 5e-11 >seq61 Length=587635 Score = 136 bits (150), Expect = 9e-27 Identities = 566/886 (64%), Gaps = 13/886 (1%) Strand=Plus/Minus Query 110272 TTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTG 110331 |||| |||| || ||||| | ||| ||||||||||| ||| || ||||| ||| | Sbjct 494897 TTATTGATTTTAGCCGTGATTTTGAATATGACTATTTTGCTTTTAAGACTCTAGAAAGAT 494838 Query 110332 CTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTG 110391 |||||||||| || ||| ||| |||| | ||| | || |||||| | || | | | Sbjct 494837 CTTATTTACTGCGGGTCGATGATAAGATTGTGGAAAGGCCACAACACCTATTAATGAGAG 494778 Query 110392 TTGCGATTGGTATTC---ATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTAT 110448 | | |||||| | |||| | |||| | || | |||||| |||||| | Sbjct 494777 TCTCCTGTGGTATCCACTATGG---TAATATAGATGCAGCAATTGAAACTTATGAACTGC 494721 Query 110449 TAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAG 110508 | | | ||| | || |||||||||||| || |||| || || || ||| | | Sbjct 494720 TCTCTCAGAAGTATTTTACTCATGCTACTCCGACATTATTCAATGCTGGTACTCTTCGCC 494661 Query 110509 GACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATG 110568 ||| || | ||||| ||| |||| ||| ||||| || ||||| || |||| || Sbjct 494660 CACAGATGTCCTCTTGTTTTATTCTCAAAATGTCAGATGACTCAATTGATGGCATTTTTG 494601 Query 110569 ATGCTCTTAAAGAAA-CTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTT 110627 || | | |||||||| ||| ||| || | |||| ||| | || | ||| Sbjct 494600 ATACAC-TAAAGAAATGTGCAAATATAAGCAAGACTGCTGGTGGATTAGGGGTGGCTGTT 494542 Query 110628 CATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTT 110687 | |||| || | |||| || | ||| | || ||| || | ||| | Sbjct 494541 TCTAATATACGAGCTGCAGGATCATACATCCGTGGTACTAATGGTAGGTCTAATGGTTTA 494482 Query 110688 GTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGT---GGTAAG 110744 |||||||| | | || | || || || ||| ||||| | |||||| || || Sbjct 494481 ATTCCAATGCTGCGTGTGTATAATGATACAGCACGTTATGTTGACCAAGGTGGAGGAAAA 494422 Query 110745 AGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTA 110804 || || || || ||||| ||||| | |||||||||||| | ||| | || ||||| || Sbjct 494421 AGGAAGGGTGCACTTGCTGTCTATTTGGAACCTTGGCATGCGGATGTTTTGGAATTTATA 494362 Query 110805 GAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATG 110864 || | | || || || || || || ||| |||||| ||||| ||| | Sbjct 494361 GAGATAAGGAAGAACCATGGTAAAGAGGAGATGAGATGCCGTGATATATTTCCAGCACTA 494302 Query 110865 TGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGT 110924 ||||| | ||| | |||||| | | || | | ||| | ||| | | |||||| Sbjct 494301 TGGATACCTGATCTGTTCATGGAGAGAGTAGAGAAGGATGCAAACTGGACATTAATGTGT 494242 Query 110925 CCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAA 110984 ||| || | ||||| | ||||| | || | | ||| |||| | || ||| Sbjct 494241 CCTGATGAATGCCCTGGGATGCAAGATGTCTGGGGTGACCAATTTAAAGAATTATATGAA 494182 Query 110985 AAATATGAAAAAGAAGG-CAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAA 111043 | |||||||||||||| | | | | |||| |||| ||| ||| | ||||| Sbjct 494181 CACTATGAAAAAGAAGGTCGCGGTAGGAAAAC-AATTAAAGCACAAAGTTTGTGGTTTGC 494123 Query 111044 AATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAA 111103 | | || | |||||| |||| || || ||||| | ||||| ||||| ||| ||| Sbjct 494122 ATTGCTACAGTCACAAATTGAGACAGGTACTCCATTTATTTGCTATAAGGATGCAGCTAA 494063 Query 111104 TCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAAT 111149 ||| ||| |||||| ||| | || || || || ||||| ||| Sbjct 494062 TCGTAAAAGCAATCAACAAAATCTGGGTACGATAAAATCTAGCAAT 494017 Score = 87.8 bits (96), Expect = 4e-12 Identities = 163/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 279857 TCTATTCCTCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATT--ATATTCAGTT 279914 |||||||| || | || ||||| || || ||| ||| | || || |||||| || Sbjct 100796 TCTATTCCAAATGTTATAGATGGATTAAAGCCTGGACAAAGGAAAGTTTTATATTCTGT- 100738 Query 279915 GTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAG 279974 |||| ||||||| | ||| | |||| || || || ||||| ||||||||| | | Sbjct 100737 GTTTAAAAAGAAGCTGAATAATG-AAATGAAAGTAGCACAATTAGCTGGTTATGTTGCTG 100679 Query 279975 AACATGCAGGTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCC 280034 ||||| | || ||||| |||||||| ||| | || || | |||||| | | || | Sbjct 100678 AACATAGTGCATACCATCATGGTGAAGCTTCTTTACAGAGTACGATTGTAAATATGGCGC 100619 Query 280035 AAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGT 280090 |||||||| | | ||||| || || | ||| ||| ||||||||||||| Sbjct 100618 AAGATTTTGTTGGAAGTAACAATTTGAACTTACTTCAGCCATGTGGTCAATTTGGT 100563 >seq50 Length=135657 Score = 129 bits (142), Expect = 1e-24 Identities = 347/515 (67%), Gaps = 13/515 (3%) Strand=Plus/Plus Query 131786 TTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCT 131845 || || ||| |||||| || ||||||||||| | || ||||| | || || || | Sbjct 77668 TTACCAGCAGTTAAAACTAAGGCAGAATGGGCAACAAAGTGGATGAATAATAAT--CGGT 77725 Query 131846 AATTTTTCTACAAGACTTGTAG-CTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGG-TG 131903 |||| | |||| | | | |||||| | ||||||||||| || ||||| || | Sbjct 77726 CATTTGCAGA-AAGAGTAATTGGCTTTTG-TGCAGTTGAAGGTATCTTGTTTTCTGGCAG 77783 Query 131904 CTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCA 131963 |||| |||||||| |||||||||||||| |||||||| ||||||||| | |||| || | Sbjct 77784 CTTT-TGTGCTATATTTTGGCTTAAGAAACGTGGATTAATGCCTGGATTAACATTTTCTA 77842 Query 131964 ATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAA 132023 || || | || || |||||||||| | ||| | || |||| ||| | |||| || Sbjct 77843 ATGAACTAATATCTAGAGATGAAGGTATTCATGCGGACTTTGGATGTTTACTTTATAAAA 77902 Query 132024 AATTTGCTGATAAACTT-GATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGAT 132082 ||| | || ||| ||| || | || || || ||||| ||||| ||||| Sbjct 77903 CATTAAATAATCGTCTTCCATGTGAA-AGAGTTCAAGAAATTATAGCAGAAGCTGTTGAA 77961 Query 132083 ATCGAGAAGGAGTTTATTA-CAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGA 132141 | || | | | || ||| || | || ||| || | |||||||||||| || Sbjct 77962 GTTGA-ACGTACATTTTTATGTGATTCATTACCTGTAGATCTCATTGGGATGAATTCTAG 78020 Query 132142 CTCTATGAAGGAGTACATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTC 132201 | ||| | || |||||||| ||||||||||||||| | || | ||| ||| Sbjct 78021 ATTAATGGCCCAATATATTGAATTTGTTGCTGATCGTTTACTGTTTGCAC-TAGATGTTC 78079 Query 132202 C-AAGATTTATAACACCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTA 132260 | ||| | || || | || || | | |||||||| ||||| | |||||| Sbjct 78080 CAAAGTTATACAATGTCACGAATCCATTTGATTGGATGGATCTTATTTCATTACAAGGTA 78139 Query 132261 AAACGAACTTCTTCGAAAGTCGTGTATCTGAGTAC 132295 |||| ||||| || || | || ||| |||| ||| Sbjct 78140 AAACTAACTTTTTTGAGAAACGAGTAGCTGAATAC 78174 >seq83 Length=161327 Score = 84.2 bits (92), Expect = 5e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAA 305464 || ||| |||| |||| | |||||||| | ||||||||||| ||||||||||| |||||| Sbjct 67608 ACTTTTAGATTTAATGAATGTGCTTGTGCTCCTTATAATGCAGATTTTGATGGTGATGAA 67549 Query 305465 ATGAATATGCATGTACCTCAA 305485 ||||| | ||| | |||||| Sbjct 67548 ATGAACCTCCATATGCCTCAA 67528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186810747184735