Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq54 100 2e-16 >seq54 Length=243407 Score = 100 bits (110), Expect = 2e-16 Identities = 170/245 (69%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 106242 ATTTATAAGAGTTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACC 106301 |||| ||||| || || ||||||||||||||||||||| || ||||| || || ||||| Sbjct 218372 ATTTGTAAGACTT-AAGAATGCAAATTTTTGTTAAAACCTTAACTGGGAAAACTATTACA 218314 Query 106302 GTGGAAACAGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAA 106361 | ||| ||||| ||| | ||| | || || ||| || ||||| || Sbjct 218313 TTAGAAGTTGAACCTTCTGATACAATTGAAAATGTAAAGGCAAAGATACAAGACAAGGAG 218254 Query 106362 GGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAA 106421 || | || ||||||||| | | || | ||| || || ||| | |||||| | | Sbjct 218253 GGAATACCTCCAGATCAACAACGTTTAATCTTTGCTGGAAAGCAACTTGAAGATGGCAGA 218194 Query 106422 ACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGA 106481 ||| | || ||||| || || || || ||||| |||||||||| ||||||||||| Sbjct 218193 ACTTTATCAGACTACAATATTCAGAAGGAGTCTACTTTACATTTAGTTTTGAGGTTACGT 218134 Query 106482 GGAGG 106486 || || Sbjct 218133 GGTGG 218129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402328938042080