Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq54 105 7e-18 seq73 98.7 1e-15 >seq54 Length=243407 Score = 105 bits (116), Expect = 7e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 |||| || || ||||| ||||| |||||||| | || | | || | || || || || Sbjct 218153 TGTAAAGTAGACTCCTTCTGAATATTGTAGTCTGATAAAGTTCTGCCA-TCTTCAAGTTG 218211 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || ||||| || ||||| || ||||| || ||||| || || || ||||| || || Sbjct 218212 CTTTCCAGCAAAGATTAAACGTTGTTGATCTGGAGGTATTCCCTCCTTGTCTTGTATCTT 218271 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 | || || || | ||| || || | ||| || || | ||||| ||||| || || Sbjct 218272 TGCCTTTACATTTTCAATTGTATCAGAAGGTTCAACTTCTAATGTAATAGTTTTCCCAGT 218331 Query 134690 TAAAGTTTTAACGAAAATTTGCATT 134714 ||| |||||||| |||||||||||| Sbjct 218332 TAAGGTTTTAACAAAAATTTGCATT 218356 >seq73 Length=203464 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| | || || || | || || || |||||||| ||||| || || || Sbjct 180700 CCACCTCTTAAACGTAAAACTAAATGAAGAGTTGATTCCTTCTGAATATTATAATCAGAT 180759 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || || || ||||| || |||||||| || | || ||||| || || Sbjct 180760 AAAGTCCGACCATCCTCAAGTTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGTGGA 180819 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| ||||||||||| || || || | || || || | ||| || Sbjct 180820 ATCCCTTCTTTATCTTGAATTTTAGCCTTTACATTTTCAATAGTATCAGATGGTTCAACT 180879 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || |||||||| |||||||| || || ||||| ||||| Sbjct 180880 TCAAGTGTTATTGTTTTACCCGTTAAAGTCTTCACAAAAATCTGCAT 180926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397547140200