Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq61 378 1e-99 seq50 239 6e-58 >seq61 Length=587635 Score = 378 bits (418), Expect = 1e-99 Identities = 1217/1866 (65%), Gaps = 42/1866 (2%) Strand=Plus/Plus Query 68400 TTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCAT 68459 || ||| | || ||||| ||| ||||| | ||| ||||||| ||||| ||||| Sbjct 493066 TTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAACCCTTCTTCCATCCATAGAAGTGCAT 493125 Query 68460 ACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATC 68519 | | ||| || | ||| | | || || |||| |||||| | || ||| |||| Sbjct 493126 AGAAGATAGCTTTGCATAGTTGGCATTTGCAATATAAATATTTAGAGACTGAGATTGACA 493185 Query 68520 GATGAAAGCTCCTCTATCTGCCGCCATTTTTATAA-TACTCTTTTGAGGAATTTCCCAAA 68578 ||| | | |||||||||||||||||| | |||| | || ||||| ||||||||| | Sbjct 493186 AATGTATGGTCCTCTATCTGCCGCCATATCAATAACTGCT-TTTTGTCTAATTTCCCAGA 493244 Query 68579 TAGTCTTAAAAATCTGTTTGATATCATCTGGAA--GGCTCG-TATTTTGAATGGATCCAC 68635 || || | | | ||||| || | | ||| ||||||||| |||| Sbjct 493245 CGGTTTTGTACAGGTCGCGAATATCTCGCGGTATAGACTCAATATTTTGAACACTTCCAT 493304 Query 68636 CATCGGATATAATTATATTCTTGA-TCTCATCATTCCACAATTTTCTCTCCGTTAAAACT 68694 | | || || | | || | |||| |||| ||| | | || |||| | Sbjct 493305 TGTTAGCAATGATACTCTGTTTCAGTCTC-TCATCCCATAGTCCCAATTCAAGTAAATCA 493363 Query 68695 CTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATA 68754 | | | ||| ||||| || | || |||||||| || || | | | || ||| Sbjct 493364 TTCAACAAATGAGGATTCACAACAAAGAACTCCCCAGACAATACACGCCTATGATATATA 493423 Query 68755 TTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTT 68814 || |||| ||||||| | ||||||||| || || | |||| || ||||| || Sbjct 493424 TTTGAGGTAAATGGTTCAAAGCTTTCATTATTCCCTAGTAACTGAGATGTAGATGCGGTA 493483 Query 68815 GGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGA 68874 ||||| || || ||||| || |||||||| |||| | ||||| || || || Sbjct 493484 GGCATTGGAGCTACCAACAACGAGTTTCTAAGGCCATACTTAGCTATTTTCTCCTTCAGT 493543 Query 68875 TGTTTCCAATCCCAAAGATCAGATG---GTACAACATTCCAAAGATCGTATTGTAGAATT 68931 | ||| | |||||| | || | || |||||||| ||||| ||||||| | Sbjct 493544 AAATCCCAGTTCCAAAGTCCTGAGGAGGGTTGCACATTCCAGAGATCAAATTGTAGCAGA 493603 Query 68932 CCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCA 68991 || |||| || ||| || | | |||||||||| || || | || || ||||| ||| Sbjct 493604 CCTCTACTAGCTGGTGAACCTTGAAATGTTTCATAGGGACCATACTTCTCTGCTAGCTCA 493663 Query 68992 CAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT-CTTG 69050 |||||||| || | ||| | || || ||||| || || |||| ||| || | | || Sbjct 493664 CAACTTGCATCAAGAGCAGCATAGTATATTGTCTCAAATATCTCAACATTTAGTTTCCTG 493723 Query 69051 TGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAAC 69110 || ||| | || ||||||| || | ||||| |||||| | || || || Sbjct 493724 -GCATCTTTAGATTCATATGGATATCTCAATATCATAAAACAATCTGCAAGACCTTGTAC 493782 Query 69111 CCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCT-TCTGGAATAGGATAAT 69169 || | ||| | || ||||||||| ||| || || | || |||||||||||||||| Sbjct 493783 TCCTAAACCAAGTGGCCTATGTCTCAGATTAGACCTC-CTGCACTCTGGAATAGGATAAT 493841 Query 69170 AATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTT 69229 | | ||| |||| || ||| ||||| | | |||| || || || || | ||| | Sbjct 493842 ATCCACGATCAATAACTTCATTTAGATTCCTTGTTGCTACCTTTACTACTTCATATAGCT 493901 Query 69230 TGAGAAAATCAAATCGTCCAT-----CTAT-AACAAACATATTCAGTGCTACAGATGCTA 69283 | |||||| ||| || |||| |||||| | || ||| |||||| | Sbjct 493902 TTTTAAAATCGAATTTCTTATTATCCCTATCAACAAAACGAGGGAGCCCTATAGATGCCA 493961 Query 69284 GATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTAC 69343 ||||||||||| ||||| || ||| | | ||| | || || |||||||||||||| | Sbjct 493962 AGTTACAAACTGCGACCTCGTTTGAACTAGTATACTCCATAATTTCTGTACATAGATTGC 494021 Query 69344 TACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAA 69403 || |||| || || ||||||||||| ||||| || || ||| || ||||| || Sbjct 494022 TAGATTTTATCGTACCCAGATTTTGTTGATTGCTTTTACGATTAGCTGCATCCTTATAGC 494081 Query 69404 GAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGAC--CCT 69461 |||||| |||||||| || ||||| || || | ||| | ||||| || || Sbjct 494082 AAATAAATGGAGTACCTGTCTCAATTTGTGACT-----GTAGCAATGCAAACCACAAACT 494136 Query 69462 ---AGCATTTATTACGGTCTTGTAACGCTTC--TCTTTTTCATATTGTGTATATAGCCGT 69516 || || ||| | | | || ||| | ||||||||||| ||| ||||| | Sbjct 494137 TTGTGCTTTAATT--GTTTTCCTACCGCGACCTTCTTTTTCATAGTGTTCATATAATTCT 494194 Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 | |||| || ||||| ||||| | || ||||| ||||||| |||||||| |||| | Sbjct 494195 TTAAATTGGTCACCCCAGACATCTTGCATCCCAGGGCATTCATCAGGACACATTAATGTC 494254 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAG 69636 || |||| | || |||| | ||| || ||||| || ||||| || ||| ||| Sbjct 494255 CAGTTTGCATCCTTCTCTACTCTCTCCATGAACAGATCAGGTATCCATAGTGCTGGAAAT 494314 Query 69637 AGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATA 69696 | ||| | | ||| | || || || || || || | | || | ||| |||| | Sbjct 494315 ATATCACGGCATCTCATCTCCTCTTTACCATGGTTCTTCCTTATCTCTATAAATTCCAAA 494374 Query 69697 ATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCC 69756 | ||| | |||||| ||||| | ||| | || | | ||| | ||| ||| || Sbjct 494375 ACATCCGCATGCCAAGGTTCCAAATAGACAGCAAGTGCACCCTTCCTTTTTCCTCCACCT 494434 Query 69757 TGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGAT 69816 || || | || | || || | |||||| || | |||||| ||||| | ||||||||| Sbjct 494435 TGGTCAACATAACGTGCTGTATCATTATACACACGCAGCATTGGAATTAAACCATTAGAC 494494 Query 69817 TTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCT 69876 ||||||| || ||| || || |||| || || |||||| || || | ||| Sbjct 494495 CTACCATTAGTACCACGGATGTATGATCCTGCAGCTCGTATATTAGAAACAGCCACCCCT 494554 Query 69877 ATTCCTCCTGCCATTTTAGAGATTAGA---GCACAACGTTTCAATGTGTCATATATACCC 69933 | ||| || || | || | ||| | ||||| || | ||| ||| | || || Sbjct 494555 AATCCACCAGCAGTCTT---GCTTATATTTGCACATTTCTTTAGTGTATCAAAAATGCCA 494611 Query 69934 TCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTT 69993 || || |||||| ||| || |||| |||||| ||||| || | | | ||| Sbjct 494612 TCAATTGAGTCATCTGACATTTTGAGAATAAAACAAGAGGACATCTGTGGGCGAAGAGTA 494671 Query 69994 CCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTAT 70053 || ||||| |||||||| |||| || ||||| || | || | ||| ||||| | || Sbjct 494672 CCAGCATTGAATAATGTCGGAGTAGCATGAGTAAAATACTTCTGAGAGAGCAGTTCATAA 494731 Query 70054 GTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATA 70113 |||||||| |||| ||||||| | | || || || | ||| | ||| || | Sbjct 494732 GTTTCAATTGCTGCATCTATATTACCATAGTGGATACCACAGGAGACTCTCATTAATAGG 494791 Query 70114 TGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTT 70173 || || || | ||| || | |||| || | || | || ||| |||| ||||| Sbjct 494792 TGTTGTGGCCTTTCCACAATCTTATCATCGACCCGCAGTAAATAAGATCTTTCTAGAGTC 494851 Query 70174 TTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAAT-AATAACAGAATTTAGTTT 70232 ||||| ||||||||| ||| ||| || | | |||| |||||| || |||| | | Sbjct 494852 TTAAAAGCAAAATAGTCATATTCAAAATCAC-GGCTAAAATCAATAACTGAGTTTAATCT 494910 Query 70233 ATCCTT 70238 ||| || Sbjct 494911 ATCTTT 494916 >seq50 Length=135657 Score = 239 bits (264), Expect = 6e-58 Identities = 606/902 (67%), Gaps = 25/902 (3%) Strand=Plus/Minus Query 39271 TTAAAAGTCAACATCTAAA--GAAAAATGATTATCTTCTTGTGA--CATAACTCCCATTT 39326 |||||| ||| |||||| | ||||| | | | |||| ||| ||||||||| Sbjct 78237 TTAAAATTCAGCATCTAGATTGAAAATTTGGTCT-TTCTGATGAGCCATAACTCCTGCCA 78179 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 ||||||||||| | || |||||||| ||||| |||||||| |||| ||||| ||| | Sbjct 78178 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 78119 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 |||| ||||||| ||||| || |||| ||| ||| || ||| | | | | | Sbjct 78118 CCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGCAAACAGTA 78059 Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506 | | ||| ||||||||||| || ||| ||| | | | ||||||| || ||||| | Sbjct 78058 AACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGAT 77999 Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG 39566 || |||| | || || ||| ||| | || || || |||| ||| || Sbjct 77998 CTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTATAATTT 77939 Query 39567 ATGTTACTACCTCATCACTCGGTGGATGC--AATAAATGTTTAA-ACATTAAGCAGGCGA 39623 | ||| || |||| || || | | | ||||||| | | | ||| || | | Sbjct 77938 CTTGAACT--CTT-TCACATGGAAGACGATTATTTAATGTTTTATAAAGTAAACATCCAA 77882 Query 39624 AGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCA 39683 |||| ||| | || ||||||||| |||| ||| ||||||||||| | |||||||| Sbjct 77881 AGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCAGGCA 77822 Query 39684 TTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGAAGATGCCT 39742 ||| ||||| || || ||||||||||| ||| |||||| | |||||||| ||||| ||| Sbjct 77821 TTAATCCACGTTTCTTAAGCCAAAATATAGCA-CAAAAGCTGCCAGAAAACAAGATACCT 77763 Query 39743 TCTACTGCTGCAAATGCAACAAGT-CTCTCTCCGTAACT--TGTATCATTATGTATCCAC 39799 || ||||| |||| || ||| | |||| || | || | || ||||| |||||| Sbjct 77762 TCAACTGC-ACAAAAGC--CAATTACTCTTTCTGCAAATGACCGATTATTATTCATCCAC 77706 Query 39800 TTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 || |||||| || || || | || || || | | ||| || | ||| || Sbjct 77705 TTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGTGATATTGCTTCAAAAAGC 77646 Query 39860 TAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAA 39919 || || | |||| | |||| ||| ||||| || ||| |||| Sbjct 77645 ATTTGGCGATCTTTTACATCTGATATATATTGATCAATTAAAAGGGAATAAGTTTCACTG 77586 Query 39920 TGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACC 39979 || || | || || || || |||||||| ||| | ||| ||||| ||||| | | Sbjct 77585 TGAATCTGCTCCATAGCAATTTGAAATCCATAATACATTCTAGCTTCTTCTATTTGAATC 77526 Query 39980 T-CTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAA 40038 | || | ||||| || | || || || || | || |||||||||||||| |||||||| Sbjct 77525 TCCTTTAAAAAAT-TTACAGCTAAGTTCTCCATTACAATTCCATCACTAGCTGCAAAAAA 77467 Query 40039 TGCCAATACATGTTTAATAAAATATTTTTCATCGGGT--GTCAATTTATTCCAGTCATTG 40096 ||| || |||| ||||||||||| |||||| || | | || | | ||| || | Sbjct 77466 TGCTAAGACATATTTAATAAAATGTTTTTC--TGGTTCCTTTAAACTTTCCCAATCTCTC 77409 Query 40097 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTAC 40156 || || | || ||||| ||||| || |||||||| || || ||| | ||||||||| Sbjct 77408 ATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCTTTTTTGTAC 77349 Query 40157 AT 40158 || Sbjct 77348 AT 77347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686907640841400