Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq50 181 8e-41 seq37 127 2e-24 >seq50 Length=135657 Score = 181 bits (200), Expect = 8e-41 Identities = 561/853 (66%), Gaps = 25/853 (3%) Strand=Plus/Plus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || ||| |||||||||||||| | | || ||||||||||| |||||||| | ||||| Sbjct 77338 ATGTGGTCAATGTACAAAAAAGAAGAAGCCTCATTTTGGACTGCAGAAGAGATAGATTTA 77397 Query 43790 ACTAAAGACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTG 43849 | | ||| | | ||||| ||||| || ||||||||||||||| | Sbjct 77398 GGTCAGGACATGAGAGATTGGGAAAGTTTAAAGGAACCAGAAAAACATTTTATTAAATAT 77457 Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 || || || |||||||| || || || || || || | || || || | | || ||| Sbjct 77458 GTCTTAGCATTTTTTGCAGCTAGTGATGGAATTGTAATGGAGAACTTAGCT-GTAAATTT 77516 Query 43910 GCGCAAGAAG-TTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGA 43968 ||| || ||||| || |||||| || | |||||| ||||||||||| || || Sbjct 77517 TTTAAAGGAGATTCAAATAGAAGAAGCTAGAATGTATTATGGATTTCAAATTGCTATGGA 77576 Query 43969 AAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGA 44028 | ||||| |||| || ||| | || ||| || || ||||| | || Sbjct 77577 GCAGATTCACAGTGAAACTTATTCCCTTTTAATTGATCAATATATATCAGATGTAAAAGA 77636 Query 44029 GAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTG 44088 || | ||| | || ||| | |||| || ||||| ||| ||||| || Sbjct 77637 TCGCCAAATGCTTTTTGAAGCAATATCACATTTACCAGCAGTTAAAACTAAGGCAGAATG 77696 Query 44089 GGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACG---ACTTGTCGCGTTTGC 44145 ||| || ||||| ||| ||| || |||| |||| | | ||| | | ||| Sbjct 77697 GGCAACAAAGTGGATGAATAATAATCGGTCATTTGCAGAAAGAGTAATTGGCTTTTGTGC 77756 Query 44146 AGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCGGCCATATTTTGGTTAAAGAAAC 44204 |||| ||||| || || ||||| || | | |||| || ||||||||| | ||||||| Sbjct 77757 AGTT---GAAGGTATCTTGTTTTCTGGCAGCTTTTG-TGCTATATTTTGGCTTAAGAAAC 77812 Query 44205 GAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTAC 44264 | || || |||||||| || || ||||| ||||| ||||| | | |||||||| | | Sbjct 77813 GTGGATTAATGCCTGGATTAACATTTTCTAATGAACTAATATCTAGAGATGAAGGTATTC 77872 Query 44265 ATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAA--GCCTT-CATGTA 44321 || || |||| | | |||||| ||| | | |||| | ||| ||||| Sbjct 77873 ATGCGGACTTTG---GATGTTTACTT---TATAAAACATTAAATAATCGTCTTCCATGTG 77926 Query 44322 AGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAAC--AAGAATTTATGACAAC 44379 | | | || ||| ||| | | ||| || || | | |||| | |||||| | Sbjct 77927 AAAGAGTTCAAGAAATTATAGCAGAAGCTGTTGAAGTTGAACGTACATTTTTATGTGA-- 77984 Query 44380 AGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATA 44439 ||||||||||| || | || || |||||| || ||| |||||||||||||| Sbjct 77985 TTCATTACCTGTAGATCTCATTGGGATGAATTCTAGATTAATGGCCCAATATATTGAATT 78044 Query 44440 CATTGCAGATCGTTTACTTTTGGAACTGGGT-TGCGATAAACACTATATTGTACAAAACC 44498 |||| ||||||||||| || | ||| | | | | | || || | ||| || | Sbjct 78045 TGTTGCTGATCGTTTACTGTTTGCACTAGATGTTCCA-AAGTTATACAATGTCACGAATC 78103 Query 44499 CGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCG 44558 | ||||||| ||||| |||||| || |||| ||||| ||||||||||| ||||| | Sbjct 78104 CATTTGATTGGATGGATCTTATTTCATTACAAGGTAAAACTAACTTTTTTGAGAAACGAG 78163 Query 44559 TTGGAGAATATCA 44571 | | ||||| || Sbjct 78164 TAGCTGAATACCA 78176 >seq37 Length=174697 Score = 127 bits (140), Expect = 2e-24 Identities = 383/584 (66%), Gaps = 33/584 (6%) Strand=Plus/Minus Query 19360 TATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA-- 19417 ||||| || || || ||| |||||||||||||| ||| || | ||| || | | Sbjct 166131 TATGGTCCTCCAGGAACTGGTAAAACATTAATTGCAAGACAAATAGCAAAAGTATTGAAA 166072 Query 19418 -CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476 ||| | |||| || ||||| ||||| || || || || ||||||||||| || ||| Sbjct 166071 GCAAGAGAACCA---AAGATTGTGAATGGACCAGAGATATTGAATAAATATGTTGGGCAA 166015 Query 19477 TCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGG 19536 ||||||||| ||||| | | ||| ||| ||||| |||||| | | || ||| Sbjct 166014 AGTGAAGAAAATATACGAAATCTTTTTTATGAAGCTGAGGAAGAATATAGACAAAAAGG- 165956 Query 19537 CGCAAAAGTTCTTTG-----CACATTATAATACTAGATGAATTGGACGCAATCTGT--AA 19589 | | || | || |||||||| || |||||||| | || ||||| ||| || Sbjct 165955 ----AGATTTTTCTGCACTTCACATTATTATTTTAGATGAAATAGATGCAATATGTAAAA 165900 Query 19590 GC-------AAAGAGGTTCTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCC 19642 || ||| | || || || || ||| | | |||| |||||||| Sbjct 165899 GCCGTGGTACAAGTAATAGTGTTGGGTCAGGTGTCAGTGATAGTATTGTTAATCAACTTT 165840 Query 19643 T--GTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAA 19700 | || || ||| || |||||||| | |||||||||||| ||||||| ||||| || Sbjct 165839 TAAGT-AAGATT-GATGGTGTTAATAGTATTAATAATATTTTACTTATTGGTATGACAAA 165782 Query 19701 TAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGA 19760 ||| || || || ||||| || |||||| |||| || | || ||| | | || || Sbjct 165781 TAGGCTTGATTTGATAGATGAGGCATTATTAAGACCTGGAAGATTTGAAGTTCATATTGA 165722 Query 19761 AATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATAC--ATCAACC 19818 |||| ||||| || || |||| | ||||| ||| | || ||||| | ||| Sbjct 165721 AATTGGATTACCAAATAAAAGTGGTAGACATGAAATATTAGAAATTCATACGAAGCAA-- 165664 Query 19819 ATGCGACAAAATAACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACC 19878 ||| || ||||| | | |||| | |||||| | || ||| | |||| || Sbjct 165663 ATGAGAGAAAATCATCGTTTAGCAGCTGATGTATGTTTATTAGAGTTAGCAGATAAAACT 165604 Query 19879 AAAAACTATAGCGGCGCAGAACTTGAGGGATTAGTGAGGGCCGC 19922 || || | | || ||||| |||| |||||| | || || || Sbjct 165603 AAGAATTTTTCAGGTGCAGAGATTGAAGGATTAATTAGAGCTGC 165560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455346060675