Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq61 118 1e-21 >seq61 Length=587635 Score = 118 bits (130), Expect = 1e-21 Identities = 450/698 (64%), Gaps = 9/698 (1%) Strand=Plus/Plus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 || || |||| || |||||||||||| ||||||||| || | | || | || || Sbjct 493418 TATATATTTGAGGTAAATGGTTCAAAGCTTTCATTATTCCCTAGTAACTGAGATGTAGAT 493477 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827 || || |||||||| || | ||| | ||| | ||| || | || || ||| Sbjct 493478 GCGGTAGGCATTGGAGCTACCAACAACGAGTTTCTAAGGCCATACTTAGCTATTTTCTCC 493537 Query 110828 TTGAGAACATCCCAGT--CGTAGT--TGAGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883 || || | |||||||| | ||| |||| |||| ||| || ||| | ||||| || Sbjct 493538 TTCAGTAAATCCCAGTTCCAAAGTCCTGAGGAGGGTTGCACATT-CCAGAGATCAAATTG 493596 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 |||| ||| || || ||||| | ||| |||||||||| ||| | || || Sbjct 493597 TAGCAGACCTCTACTAGCTGGTGAACCTTGAAATGTTTCATAGGGACCATACTTCTCTGC 493656 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 | ||||| || || || || | || | || || || ||||| || | |||| | Sbjct 493657 TAGCTCACAACTTGCATCAAGAGCAGCATAGTATATTGTCTCAAATATCTCAACATTTAG 493716 Query 111004 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 111063 | | |||| || | || ||| ||| || | | | ||||| ||| || ||||| Sbjct 493717 TTTCCTGGCATCTTTAGATTCATATGGATATCTCAATATCATAAAACAATCTGCAAGACC 493776 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT-CAACGG 111122 ||| || || ||||||| || || |||| || ||||||| || ||| ||| || | Sbjct 493777 TTGTACTCCTAAACCAAGTGGCCTATGTCTCAGATTAGAC-CTCCTGCACTCTGGAATAG 493835 Query 111123 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCAT 111182 ||||| | | ||||| ||| |||||||| | || | | |||| | ||||| Sbjct 493836 GATAATATCCACGATCAATAACTTCATTTAGATTCCTTGTTGCTACCTTTACTACTTCAT 493895 Query 111183 GAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTG 111242 || |||| | |||| || | | | || || ||| | || || | || | Sbjct 493896 ATAGCTTTTTAAAATCGAATTTCTTATTATCCCTATCAACAAAACGAGGGAGCCCTATAG 493955 Query 111243 ATGCCAAATTGCAAACAGCCGTCTCATCCTTATCT-GTGTACTCTAAAATTTCTGTACAT 111301 ||||||| || ||||| || ||| | | | || || ||||| | ||||||||||||| Sbjct 493956 ATGCCAAGTTACAAACTGCGACCTCGT-TTGAACTAGTATACTCCATAATTTCTGTACAT 494014 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 | ||| | || ||||| |||| ||| | ||| || || || || |||||| Sbjct 494015 AGATTGCTAGATTTTATCGTACCCAGATTTTGTTGATTGCTTTTACGATTAGCTGCATCC 494074 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399 || ||| || | || || || ||||| | ||||| Sbjct 494075 TTATAGCAAATAAATGGAGTACCTGTCTCAATTTGTGA 494112 Score = 82.4 bits (90), Expect = 1e-10 Identities = 154/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 181828 TACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTGTTTGAACCTGTATAGTCGTTGG 181887 ||||||||||||||||||||| ||| | ||| | ||||| || | | || | | Sbjct 100562 TACCAAATTGACCACATGGCTGAAGTAAGTTCAAATTGTTACTTCCAACAAAATCTTGCG 100621 Query 181888 CCAACTTAACGATGGTA-TCCGCAAGGGACACTTCACCGTGGTGGTAAGCTGACT-TG-T 181944 ||| || || || ||| || | || || ||||||| || ||||| || ||| || | Sbjct 100622 CCATATTTACAATCGTACTCTGTAA-AGAAGCTTCACCATGATGGTATGC--ACTATGTT 100678 Query 181945 CCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATCTTTGAGGTTCTTGTGGAAGC 182004 | |||||||| | || || ||||| || |||||||||| || || ||||| | || Sbjct 100679 CAGCAACATAACCAGCTAATTGTGCTACTTTCATTTCATTATTCAGCTTCTTTTTAAACA 100738 Query 182005 AAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATC 182044 || ||| | |||||||| || |||||| | ||||| Sbjct 100739 CAGAATATAAAACTTTCCTTTGTCCAGGCTTTAATCCATC 100778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030940196000