Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq73 159 4e-34 seq54 150 2e-31 seq61 102 9e-17 >seq73 Length=203464 Score = 159 bits (176), Expect = 4e-34 Identities = 178/237 (75%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 27396 TATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGT 27455 ||||| || ||||| || ||||| ||||| | || || || || || || ||||| || Sbjct 180934 TATTA--ATTATGCAGATTTTTGTGAAGACTTTAACGGGTAAAACAATAACACTTGAAGT 180877 Query 27456 TGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCC 27515 ||| || ||||| |||| |||| | |||||||||||||| || || || || ||||| Sbjct 180876 TGAACCATCTGATACTATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGAAGGGATTCC 180817 Query 27516 TCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGC 27575 || || || || | ||||||||||||| || ||||| ||||||| ||| || || | Sbjct 180816 ACCTGATCAACAAAGATTAATTTTTGCTGGGAAACAACTTGAGGATGGTCGGACTTTATC 180757 Query 27576 AGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||||| | || |||||||| ||||||||| |||| || ||| | | ||||| Sbjct 180756 TGATTATAATATTCAGAAGGAATCAACTCTTCATTTAGTTTTACGTTTAAGAGGTGG 180700 >seq54 Length=243407 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| || || | || || || |||||||| | || ||||| | Sbjct 218356 AATGCAAATTTTTGTTAAAACCTTAACTGGGAAAACTATTACATTAGAAGTTGAACCTTC 218297 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| |||| | ||||| || || || |||||||||||||| |||||||| || Sbjct 218296 TGATACAATTGAAAATGTAAAGGCAAAGATACAAGACAAGGAGGGAATACCTCCAGATCA 218237 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| |||| |||||||| |||||||| || |||| | || || ||||||| || Sbjct 218236 ACAACGTTTAATCTTTGCTGGAAAGCAACTTGAAGATGGCAGAACTTTATCAGACTACAA 218177 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || ||||| || ||| | ||| |||| ||| | | || ||||| Sbjct 218176 TATTCAGAAGGAGTCTACTTTACATTTAGTTTTGAGGTTACGTGGTGG 218129 >seq61 Length=587635 Score = 102 bits (112), Expect = 9e-17 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 80068 CCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCA-AGTGTGGGGTTCTCCAT 80126 ||||||||||| || || | |||||||||| ||||| ||| ||| ||| || | || Sbjct 493100 CCCTTCTTCCATCCATAGAAGTGCATAGAAGATAGCTTTGCATAGT-TGGCATTTGCAAT 493158 Query 80127 GAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATCTGCCGCCATTTCAAT 80186 | || || ||||||||||| ||||| ||| | | || | |||||||||||| ||||| Sbjct 493159 ATAAATATTTAGAGACTGAGATTGACAAATGTATGGTCCTCTATCTGCCGCCATATCAAT 493218 Query 80187 AATTGACTTTTGTGGAATTTCCCATACTGT 80216 || || |||||| ||||||||| || || Sbjct 493219 AACTGCTTTTTGTCTAATTTCCCAGACGGT 493248 Score = 86.0 bits (94), Expect = 7e-12 Identities = 188/281 (67%), Gaps = 3/281 (1%) Strand=Plus/Plus Query 81181 GGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAA 81240 ||||| || | ||| ||||| | ||||| | || |||||||| || |||||| Sbjct 494228 GGGCATTCATCAGGACACATTAATGTCCAGTTTGCATCCTTCTCTACTCTCTCCATGAAC 494287 Query 81241 GCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGG 81300 ||||| ||||| || || | || | || ||||| | | |||||| | ||| ||| Sbjct 494288 AGATCAGGTATCCATAGTGCTGGAAATATATCACGGCATCTCATCTCCTCTTTACCATGG 494347 Query 81301 TTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCG 81360 || | | ||| | ||| |||| | ||||||||||| || |||| ||| || || Sbjct 494348 TTCTTCCTTATCTCTATAAATTCCAAAACATCCGCATGCCAAGGTTCCAAATAGACAGCA 494407 Query 81361 ATCGACCCCTTGC---GACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACA 81417 | | ||||| | | ||||| |||| || ||||| || || | ||| | ||| Sbjct 494408 AGTGCACCCTTCCTTTTTCCTCCACCTTGGTCAACATAACGTGCTGTATCATTATACACA 494467 Query 81418 CGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACC 81458 |||| ||| || || | ||||| ||| ||| || ||||| Sbjct 494468 CGCAGCATTGGAATTAAACCATTAGACCTACCATTAGTACC 494508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309437601200