Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq54 118 7e-22 seq73 107 1e-18 >seq54 Length=243407 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34494 CAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTC 34553 ||| || ||||| | ||| |||||| ||||| || || ||||| | |||| | || Sbjct 218143 CAAAACTAAATGTAAAGTAGACTCCTTCTGAATATTGTAGTCTGATAAAGTTCTGCCATC 218202 Query 34554 TTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 ||||||||| || || ||||| |||||||| ||||| || || || | |||||||||||| Sbjct 218203 TTCAAGTTGCTTTCCAGCAAAGATTAAACGTTGTTGATCTGGAGGTATTCCCTCCTTGTC 218262 Query 34614 TGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGT 34673 | |||||| |||| | |||||| || || ||||| | || || || Sbjct 218263 TTGTATCTTTGCCTTTACATTTTCAATTGTATCAGAAGGTTCAACTTCTAATGTAATAGT 218322 Query 34674 TTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || ||||| ||||| |||||||| ||||| Sbjct 218323 TTTCCCAGTTAAGGTTTTAACAAAAATTTGCAT 218355 >seq73 Length=203464 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| || || ||||| ||||| ||||| ||||| |||||||| || Sbjct 180700 CCACCTCTTAAACGTAAAACTAAATGAAGAGTTGATTCCTTCTGAATATTATAATCAGAT 180759 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || ||||||||||| || ||||| ||||| | ||||| || || || Sbjct 180760 AAAGTCCGACCATCCTCAAGTTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGTGGA 180819 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || || || ||| ||| ||| | || || | ||| || || || || Sbjct 180820 ATCCCTTCTTTATCT-TGAATTTTAGCCTTTACATTTTCAATAGTATCAGATGGTTCAAC 180878 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||||| |||||||| ||||| || ||||||||||||||||| Sbjct 180879 TTCAAGTGTTATTGTTTTACCCGTTAAAGTCTTCACAAAAATCTGCAT 180926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729082171455