Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq54 86.0 4e-12 >seq54 Length=243407 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| ||||| | ||||||||| ||||||| | || || ||| | Sbjct 218356 AATGCAAATTTTTGTTAAAACCTTAACTGGGAAAACTATTACATTAGAAGTTGAACCTTC 218297 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| || || ||| ||| ||||| || || | || || Sbjct 218296 TGATACAATTGAAAAT--GTAAAGGCAAAGATACAAGACAAGGAGGGAATACCTCCAGAT 218239 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| ||||| ||||| ||||| ||| | || || | | | || || || ||| Sbjct 218238 CAACAACGTTTAATCTTTGCTGGAAAGCAACTTGAAGATGGCAGAACTTTATCAGACTAC 218179 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || || || ||| ||||| ||||| |||||| | || ||||| || Sbjct 218178 AATATTCAGAAGGAGTCTACTTTACATTTAGTTTTGAGGTTACGTGGTGG 218129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355861814495145