Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq54 145 5e-30 seq73 125 5e-24 >seq54 Length=243407 Score = 145 bits (160), Expect = 5e-30 Identities = 174/235 (74%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 23604 ACTTAA-AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTG 23662 |||||| |||||| ||||| ||||||||| | || || ||||| || || | ||||||| Sbjct 218363 ACTTAAGAATGCAAATTTTTGTTAAAACCTTAACTGGGAAAACTATTACATTAGAAGTTG 218304 Query 23663 ACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGC 23722 | | | || || |||||| |||| ||| || ||||| || || |||| | Sbjct 218303 AACCTTCTGATACAATTGAAAATGTAAAGGCAAAGATACAAGACAAGGAGGGAATACCTC 218244 Query 23723 CAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCG 23782 |||||||||| |||||||| ||||| || || ||||| ||||| | | |||||| | Sbjct 218243 CAGATCAACAACGTTTAATCTTTGCTGGAAAGCAACTTGAAGATGGCAGAACTTTATCAG 218184 Query 23783 ATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | ||||| || || || ||||| || |||||||||||||| ||||| || || || Sbjct 218183 ACTACAATATTCAGAAGGAGTCTACTTTACATTTAGTTTTGAGGTTACGTGGTGG 218129 >seq73 Length=203464 Score = 125 bits (138), Expect = 5e-24 Identities = 175/244 (72%), Gaps = 1/244 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || | ||||| ||||| || || || |||||||| | | Sbjct 180926 ATGCAGATTTTTGTGAAGACTTTAACGGGTAAAACAATAACACTTGAAGTTGAACCATCT 180867 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| |||| |||||| || |||||||| | || || |||||| Sbjct 180866 GATACTATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGAAGGGATTCCACCTGATCAA 180807 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | ||||| ||||| || |||||||| || || | || |||||| ||||| || Sbjct 180806 CAAAGATTAATTTTTGCTGGGAAACAACTTGAGGATGGTCGGACTTTATCTGATTATAAT 180747 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATC-AGCAGTTAA 23849 || || || || || || | |||||||||||| | || |||| || || ||| |||| Sbjct 180746 ATTCAGAAGGAATCAACTCTTCATTTAGTTTTACGTTTAAGAGGTGGTTCTTGCAATTAA 180687 Query 23850 AGAT 23853 | || Sbjct 180686 ATAT 180683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009043868580