Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq50 224 8e-54 >seq50 Length=135657 Score = 224 bits (248), Expect = 8e-54 Identities = 580/862 (67%), Gaps = 39/862 (5%) Strand=Plus/Minus Query 4258 TTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTT 4317 |||||||||| | |||||| || || || || |||||||| |||| ||| |||||| | Sbjct 78178 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 78119 Query 4318 CCATAAAATCAAACGGATTAGTTGCGTTGTA-ATGTTTTTCACACTTTAGAGCTACAAGC 4376 |||| ||||||| ||||| || | ||||| | ||| ||| | ||| || | || Sbjct 78118 CCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACA-TCTAGTGCAAACAGT 78060 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA-A 4435 || || ||||| |||||||| ||||| ||| ||| | | | || || ||||| | | Sbjct 78059 AAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGAGA 78000 Query 4436 TCTCACAGGTAGCGCGTATGTCA-AAAACTCTT-GTTCTATAGTTACGGCTTCTGTGATT 4493 ||| ||||||| | || || |||| | | |||| | || ||||||| || Sbjct 77999 TCT-ACAGGTAATGA--ATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTATA 77943 Query 4494 ATATCTTTTATTTTATCTT-TAGATG--GTTTATTTACTAAGTATCCAAACAATAAACAC 4550 || |||| | | | || | || | | ||||||| | || | || | |||||| Sbjct 77942 ATTTCTTGAACTCTTTCACATGGAAGACGATTATTTAAT--GTTTTATAA-AGTAAACAT 77886 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 |||| || ||| | |||||| ||||| || ||||| |||||||| |||||||| Sbjct 77885 CCAAAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCA 77826 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 |||||||| || | || ||||||||||||||||| ||| |||||||| || || Sbjct 77825 GGCATTAATCCACGTTTCTTAAGCCAAAATATAGCACAAAAGCTGCCAGAAAACAAGATA 77766 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATC 4730 ||||| || || ||| | | || || | || || | || | || ||| Sbjct 77765 CCTTCAACTGCACAAAAGCCAATTACTCTTTCTGCAAATGACCGA---TTATTATTCATC 77709 Query 4731 CATTTTAATGCCCAGTTAGCTTTTTTCTTAAC-GCACGGAATTGTGTATATAGCGTTAAA 4789 || ||| |||||| | || || | ||||| || | || |||| |||| || | ||| Sbjct 77708 CACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGTG-ATATTGCTTCAAA 77650 Query 4790 TA--ATTT----ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 | |||| | |||| || ||| ||||| || |||| ||| ||| Sbjct 77649 AAGCATTTGGCGATCTTTTACA------TCTGATATATATTGATCAATTAAAAGGGAATA 77596 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 ||||| || || | || |||||||| |||||||| ||| | |||||||||| Sbjct 77595 AGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATAATACATTCTAGCTTCTTC 77536 Query 4904 TACTTGAA-CTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGG 4962 || ||||| || | ||| ||||| || | ||||||| || |||| || || ||||| | Sbjct 77535 TATTTGAATCTCCTTTAAAAAAT-TTACAGCTAAGTTCTCCATTACAATTCCATCACTAG 77477 Query 4963 CTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGG---CTTAAGTTTTT 5019 |||||||||| || || |||| || ||| | |||| || || ||| | ||| Sbjct 77476 CTGCAAAAAATGCTAAGACAT---ATTTAATAAAATGTTTTTCTGGTTCCTTTAAACTTT 77420 Query 5020 TCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCG 5079 ||| | || || | | |||||| | ||||| |||||||||| || ||||| Sbjct 77419 CCCAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTT 77360 Query 5080 CTTTTTTGTACATAGACCAAAT 5101 ||||||||||||| ||||| || Sbjct 77359 CTTTTTTGTACATTGACCACAT 77338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427048897369955