Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq61 408 6e-109 seq50 266 5e-66 >seq61 Length=587635 Score = 408 bits (452), Expect = 6e-109 Identities = 1217/1853 (66%), Gaps = 36/1853 (2%) Strand=Plus/Plus Query 75403 TTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCAT 75462 || ||| | || ||||| ||||||||||| |||| ||||||| ||||| ||||| Sbjct 493066 TTGTGTTCTTAAGTAGTAAGCACCAGTTTTTAAACCCTTCTTCCATCCATAGAAGTGCAT 493125 Query 75463 GCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATC 75522 | ||| || | ||| | | || || |||| |||||| | |||||| |||| Sbjct 493126 AGAAGATAGCTTTGCATAGTTGGCATTTGCAATATAAATATTTAGAGACTGAGATTGACA 493185 Query 75523 GATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAAT 75582 ||| | | ||||||||| |||||||| | |||| | ||||| ||||||||| | Sbjct 493186 AATGTATGGTCCTCTATCTGCCGCCATATCAATAACTGCTTTTTGTCTAATTTCCCAGAC 493245 Query 75583 AGTTTTGAAAACTTGTTTGATATCATCTGGAAGA---TTTGTATTTTGAATGGATCCGCC 75639 |||||| | | | ||||| || | | | ||||||||| ||| Sbjct 493246 GGTTTTGTACAGGTCGCGAATATCTCGCGGTATAGACTCAATATTTTGAACACTTCCATT 493305 Query 75640 ATCAGATATAATTGTATTCTTGA-TCTCATCATTCCACAATTTTCTCTCGGTTAAAACTC 75698 | || || || | | || | |||| |||| ||| | | || |||| | Sbjct 493306 GTTAGCAATGATACTCTGTTTCAGTCTC-TCATCCCATAGTCCCAATTCAAGTAAATCAT 493364 Query 75699 TAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATAT 75758 | | | ||||||||| |||| || || ||||||||||| | | | || |||| Sbjct 493365 TCAACAAATGAGGATTCACAACAAAGAACTCCCCAGACAATACACGCCTATGATATATAT 493424 Query 75759 TACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCG 75818 | |||| ||||||| | |||||| || || | | |||| || || || || | Sbjct 493425 TTGAGGTAAATGGTTCAAAGCTTTCATTATTCCCTAGTAACTGAGATGTAGATGCGGTAG 493484 Query 75819 GCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGAT 75878 |||| || || ||||| || ||||| || |||| | ||||| || || || Sbjct 493485 GCATTGGAGCTACCAACAACGAGTTTCTAAGGCCATACTTAGCTATTTTCTCCTTCAGTA 493544 Query 75879 ATTTCCAATCCCAAAGATCTGATG---GTACAACATCCCAGAGATCGTATTGTAGAATTC 75935 | | ||| | |||||| |||| | || |||| ||||||||| ||||||| | | Sbjct 493545 AATCCCAGTTCCAAAGTCCTGAGGAGGGTTGCACATTCCAGAGATCAAATTGTAGCAGAC 493604 Query 75936 CGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGC 75995 | | ||||| ||| || | | ||||||| || | || | ||| || ||||| || | Sbjct 493605 CTCTACTAGCTGGTGAACCTTGAAATGTTTCATAGGGACCATACTTCTCTGCTAGCTCAC 493664 Query 75996 AACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGAT-CTTGC 76054 |||| || || | ||| | || || ||||| || || |||| ||| || | | || Sbjct 493665 AACTTGCATCAAGAGCAGCATAGTATATTGTCTCAAATATCTCAACATTTAGTTTCCTG- 493723 Query 76055 GCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACT 76114 || || | ||| | ||||| || | ||||| |||||| || || || ||| Sbjct 493724 GCATCTTTAGATTCATATGGATATCTCAATATCATAAAACAATCTGCAAGACCTTGTACT 493783 Query 76115 CCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCT-TCTGGAATAGGGTAATA 76173 || | ||||| || ||||||||| ||| || | | || ||||||||||| ||||| Sbjct 493784 CCTAAACCAAGTGGCCTATGTCTCAGATTAGACCTC-CTGCACTCTGGAATAGGATAATA 493842 Query 76174 ATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTT 76233 | ||| |||| || ||| ||||| || |||| || || || || | ||| || Sbjct 493843 TCCACGATCAATAACTTCATTTAGATTCCTTGTTGCTACCTTTACTACTTCATATAGCTT 493902 Query 76234 GAGAAAATCAAATTTTCCAT-----CTATCA-CAAACATATTAAGAGCTATAGATGCTAG 76287 |||||| ||||| || |||||| |||| | || |||||||||| | Sbjct 493903 TTTAAAATCGAATTTCTTATTATCCCTATCAACAAAACGAGGGAGCCCTATAGATGCCAA 493962 Query 76288 ATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACT 76347 |||||||| || ||||| || | | | | ||| | || || || || |||||||| || Sbjct 493963 GTTACAAACTGCGACCTCGTTTGAACTAGTATACTCCATAATTTCTGTACATAGATTGCT 494022 Query 76348 ACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAG 76407 | | || || || || ||||||||||| ||||| || ||| || |||||||| Sbjct 494023 AGATTTTATCGTACCCAGATTTTGTTGATTGCTTTTACGATTAGCTGCATCCTTATAGCA 494082 Query 76408 AACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTA-G 76466 || ||| ||||| || || ||||| ||||| | | | | ||| | ||| | | Sbjct 494083 AATAAATGGAGTACCTGTCTCAATTTGTGACTGTAGCAATGCAAACCACAA-ACTTTGTG 494141 Query 76467 CTTTTATTATAGATTTGTATCGCTTC--TCTCTTTCATATTGTGTATATAACCGTTCAAA 76524 |||| ||| | || || ||| | ||| ||||||| ||| |||||| || ||| Sbjct 494142 CTTTAATTGTT--TTCCTACCGCGACCTTCTTTTTCATAGTGTTCATATAATTCTTTAAA 494199 Query 76525 TTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTC 76584 || || ||||| ||||| | || ||||| ||||||| |||||||| |||| ||| | Sbjct 494200 TTGGTCACCCCAGACATCTTGCATCCCAGGGCATTCATCAGGACACATTAATGTCCAGTT 494259 Query 76585 ACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATC 76644 |||| | || || | | ||| || ||||||||||||||||| || ||||| ||| Sbjct 494260 TGCATCCTTCTCTACTCTCTCCATGAACAGATCAGGTATCCATAGTGCTGGAAATATATC 494319 Query 76645 TCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATC 76704 ||| ||| || || || || ||||| | | |||| || |||| || ||| Sbjct 494320 ACGGCATCTCATCTCCTCTTTACCATGGTTCTTCCTTATCTCTATAAATTCCAAAACATC 494379 Query 76705 AGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATC 76764 | |||||| ||||| | ||| | || | ||||| | ||| || || || || Sbjct 494380 CGCATGCCAAGGTTCCAAATAGACAGCAAGTGCACCCTTCCTTTTTCCTCCACCTTGGTC 494439 Query 76765 TATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACC 76824 | ||| | || || | |||||| || | || ||||||||| | || ||||| |||| Sbjct 494440 AACATAACGTGCTGTATCATTATACACACGCAGCATTGGAATTAAACCATTAGACCTACC 494499 Query 76825 ATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCC 76884 ||| || ||| || || ||| || || |||||| || || | |||| ||| Sbjct 494500 ATTAGTACCACGGATGTATGATCCTGCAGCTCGTATATTAGAAACAGCCACCCCTAATCC 494559 Query 76885 TCCTGCCATTTTAGAGATTAGA---GCACAGCGTTTCAATGTGTCATAGATGCCCTCTAT 76941 || || | || | ||| | ||||| || | ||| ||| | ||||| || || Sbjct 494560 ACCAGCAGTCTT---GCTTATATTTGCACATTTCTTTAGTGTATCAAAAATGCCATCAAT 494616 Query 76942 ACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGC 77001 ||||| ||| || |||| |||||| ||||| || | ||| ||| || || Sbjct 494617 TGAGTCATCTGACATTTTGAGAATAAAACAAGAGGACATCTGTGGGCGAAGAGTACCAGC 494676 Query 77002 ATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTC 77061 ||| || ||||| |||| |||||||| || | || | ||| || || | || ||||| Sbjct 494677 ATTGAATAATGTCGGAGTAGCATGAGTAAAATACTTCTGAGAGAGCAGTTCATAAGTTTC 494736 Query 77062 AATAACTGCTTCTATA-TCCCATTGATGAATTCCTACA-GCGACACGCATCAACATATGC 77119 ||| |||| |||||| | |||| | || || || ||| | ||| | ||| || | || Sbjct 494737 AATTGCTGCATCTATATTACCATAG-TGGATACC-ACAGGAGACTCTCATTAATAGGTGT 494794 Query 77120 TGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTA 77179 || || | ||| ||| |||||| || | || || || ||| |||| | ||| ||| Sbjct 494795 TGTGGCCTTTCCACAATCTTATCATCGACCCGCAGTAAATAAGATCTTTCTAGAGTCTTA 494854 Query 77180 AAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAAT-AATAACCGAATTTA 77231 ||| ||||||||| ||| ||| || | | |||| |||||| || |||| Sbjct 494855 AAAGCAAAATAGTCATATTCAAAATCAC-GGCTAAAATCAATAACTGAGTTTA 494906 >seq50 Length=135657 Score = 266 bits (294), Expect = 5e-66 Identities = 620/911 (68%), Gaps = 43/911 (5%) Strand=Plus/Minus Query 46284 TTAAAAGTCGACATCTAAA--GAAAAATGATTATCTTCTTGTGA--CATAACTCCCATTT 46339 |||||| || |||||| | ||||| | | | |||| ||| ||||||||| Sbjct 78237 TTAAAATTCAGCATCTAGATTGAAAATTTGGTCT-TTCTGATGAGCCATAACTCCTGCCA 78179 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 ||||||||||| |||| |||||||| ||||| |||||||| |||| ||||| ||| | Sbjct 78178 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 78119 Query 46400 CCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCA 46459 |||| ||||||| ||||| || ||||| || | ||| || ||| | | || || Sbjct 78118 CCATCCAATCAAATGGATTCGTGACATTGTATAACTTTGGAACATCTAGTGC---AAACA 78062 Query 46460 GT---CTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGA 46516 || | ||| ||||| ||||| ||||| ||| | | | ||||||| || |||| Sbjct 78061 GTAAACGATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAATGA 78002 Query 46517 GTTTGACCGGTAGAGCCTC-CGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATT 46575 | | || |||| | || | ||| || | |||||| ||||| || | ||| Sbjct 78001 GATCTACAGGTAATGAATCACATAAAAATGTAC-GTTCAACTTCAACAGCTTCTGCTATA 77943 Query 46576 ATCGATGTTACTGTTTCCTCACTTGGTGGATGC--ATCAAATGTTTAA-ACATTAAACAT 46632 || | ||| |||| || ||| || | || ||||||| | | | ||||||| Sbjct 77942 ATTTCTTGAACTCTTTC---ACATGGAAGACGATTATTTAATGTTTTATAAAGTAAACAT 77886 Query 46633 GCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCA 46692 |||| || ||||| |||||||||||| |||| ||| ||||||||||| | ||| Sbjct 77885 CCAAAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATCCA 77826 Query 46693 GGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAATAT 46751 ||||||| |||||| || || ||||||||||||| | | |||| | |||||||| || || Sbjct 77825 GGCATTAATCCACGTTTCTTAAGCCAAAATATAG-CACAAAAGCTGCCAGAAAACAAGAT 77767 Query 46752 GCCTTCTACAGCCGCGAATGCGACAAGT-CTCTCTCCGTAACTGGC--ATCATTATGAAT 46808 ||||| || | | | || || ||| | |||| || | || || | || ||||| || Sbjct 77766 ACCTTCAACTG-CACAAAAGC--CAATTACTCTTTCTGCAAATGACCGATTATTATTCAT 77710 Query 46809 CCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 |||| || ||||| || ||||| | || || || | | ||| || | ||| Sbjct 77709 CCACTTTGTTGCCCATTCTGCCTTAGTTTTAACTGCTGGTAAATGTGATATTGCTTCAAA 77650 Query 46869 GAGAAAGtttttttCATCACT---ATCTTTAACATATGTATCTATTAAAAGACTATACAT 46925 || | ||| ||| | |||| | |||| ||| |||||||| ||| | Sbjct 77649 AAGCA---TTTGGCGATCTTTTACATCTGATATATATTGATCAATTAAAAGGGAATAAGT 77593 Query 46926 TTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 46985 ||| ||||| | || ||||| || |||||||| ||| | ||| ||||| || Sbjct 77592 TTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATAATACATTCTAGCTTCTTCTAT 77533 Query 46986 CTGTACCT-CTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAG 47044 || | || || || ||||| | ||| || ||||| | || |||||||||||||| | Sbjct 77532 TTGAATCTCCTTTAAAAAAT-TTACAGCTAAGTTCTCCATTACAATTCCATCACTAGCTG 77474 Query 47045 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTT----TATTC 47100 |||||||||| || |||| ||||||||||| |||||| ||| || || | | | Sbjct 77473 CAAAAAATGCTAAGACATATTTAATAAAATGTTTTTC--TGGT--TCCTTTAAACTTTCC 77418 Query 47101 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCT 47160 || || | || || | || ||||| ||||| || ||||| ||||| || ||| || Sbjct 77417 CAATCTCTCATGTCCTGACCTAAATCTATCTCTTCTGCAGTCCAAAATGAGGCTTCTTCT 77358 Query 47161 TTTTTATACAT 47171 ||||| ||||| Sbjct 77357 TTTTTGTACAT 77347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712933196923200