Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq73 93.3 1e-13 seq54 84.2 5e-11 >seq73 Length=203464 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||||||||| || || || || || || ||||| | |||||| | ||||| || || Sbjct 180723 ATGAAGAGTTGATTCCTTCTGAATATTATAATCAGATAAAGTCCGACCATCCTCAAGTTG 180782 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 |||||| || || || | || || || || | | || ||||| || ||||||||||| Sbjct 180783 TTTCCCAGCAAAAATTAATCTTTGTTGATCAGGTGGAATCCCTTCTTTATCTTGAATTTT 180842 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 || ||| | || | | || || || |||||||| || || ||||| ||||| Sbjct 180843 AGCCTTTACATTTTCAATAGTATCAGATGGTTCAACTTCAAGTGTTATTGTTTTACCCGT 180902 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | ||||||||| || | |||||| Sbjct 180903 TAAAGTCTTCACAAAAATCTGCAT 180926 >seq54 Length=243407 Score = 84.2 bits (92), Expect = 5e-11 Identities = 144/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--G 151958 ||| | ||||||||| || || || ||||| || | ||||||||| |||||||| || | Sbjct 218152 ATGTAAAGTAGACTCCTTCTGAATATTGTAGTCTGATAAAGTTCTGCCATCTTCAAGTTG 218211 Query 151959 CTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATT 152018 |||| || || ||||| | | || || || | | ||||| ||||| ||||| || Sbjct 218212 CTTT--CCAGCAAAGATTAAACGTTGTTGATCTGGAGGTATTCCCTCCTTGTCTTGTATC 218269 Query 152019 TTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 ||| || ||| | || | | || ||| || ||||| | ||||||||||| || Sbjct 218270 TTTGCCTTTACATTTTCAATTGTATCAGAAGGTTCAACTTCTAATGTAATAGTTTTCCCA 218329 Query 152079 GTGAGAGTCTTCACGAAGACCTGCATT 152105 || | || || || || | |||||| Sbjct 218330 GTTAAGGTTTTAACAAAAATTTGCATT 218356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153818804250585