Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20andersoni_20[genbank_20GCA_5F001865355.1_202016- 11-03] 135 sequences; 9,088,557 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq50 232 7e-56 >seq50 Length=135657 Score = 232 bits (256), Expect = 7e-56 Identities = 520/762 (68%), Gaps = 37/762 (5%) Strand=Plus/Minus Query 23219 TTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTT 23278 |||| ||||| | || ||| | || ||||| || || ||||| | |||||| ||| | Sbjct 78178 TTTGGTATTCAGCTACTCGTTTCTCAAAAAAGTTAGTTTTACCTTGTAATGAAATAAGAT 78119 Query 23279 CCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTT---ACATGATAATTC---CT 23332 |||| ||||||||||||| | ||| |||| |||| |||| || | | | Sbjct 78118 CCATCCAATCAAATGGATTCGTGACATTGTATAA--CTTTGGAACATC-TAGTGCAAACA 78062 Query 23333 TTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTA 23392 |||| | ||| || ||||||||||||||||| ||| || | | || || || | Sbjct 78061 GTAAACG---ATCAGCAACAAATTCAATATATTGGGCCATTAATCTAGAATTCATCCCAA 78005 Query 23393 TTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAA 23452 | || | ||| || | | |||| |||| ||| ||||| |||||| ||| | Sbjct 78004 TGAGATCTACAGGTAATGAATCACATAAAAATGTACGTTCAACTTCAACAGCTTCTGCTA 77945 Query 23453 TTATTTGAACAATAACTTCTTCACTAGGTGGAT-ATT--TTAAATACTTAAACAATAAAC 23509 | |||| | |||| ||||| || || ||| |||| ||| | | ||||| Sbjct 77944 TAATTT---CTTGAACTCTTTCACATGGAAGACGATTATTTAATGTTTTATAAAGTAAAC 77888 Query 23510 ATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATC 23569 || |||| || ||| | |||||||| ||| || | |||||||||||||||||||| Sbjct 77887 ATCCAAAGTCCGCATGAATACCTTCATCTCTAGATATTAGTTCATTAGAAAATGTTAATC 77828 Query 23570 CTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGGAAAAGAAA 23628 | ||||||||||| ||||| |||| ||||||||| ||| |||| | | || ||||| || Sbjct 77827 CAGGCATTAATCCACGTTTCTTAAGCCAAAATATAGCA-CAAAAGCTGCCAGAAAACAAG 77769 Query 23629 ATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTAC--CAAATGTTGCATTATAATCAG 23686 ||||| ||||| | | |||| |||| | || | | |||||| ||||| || Sbjct 77768 ATACCTTCAACTG-CACAAAAGCCA-ATTACTCTTTCTGCAAATGACCGATTATTAT--- 77714 Query 23687 AAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACT--CAATTGTTTCAATTGC 23744 ||||| ||| ||| ||| | ||||| | ||||| || || || | ||||| Sbjct 77713 TCATCCACTTTGTTGCCCATTCTGCCTT-AGTTTTAACTGCTGGTAAATG-TGATATTGC 77656 Query 23745 TTTTAAGAGAAAAGTTT---TTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACT 23801 || || || | ||| |||| ||||| ||||||| |||||||| | Sbjct 77655 TTCAAAAAGCA---TTTGGCGATCTTTTACATCTGATATATATTGATCAATTAAAAGGGA 77599 Query 23802 ATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861 ||| ||||| ||||| | || |||||||| ||||| |||||| | ||||||||| Sbjct 77598 ATAAGTTTCACTGTGAATCTGCTCCATAGCAATTTGAAATCCATAATACATTCTAGCTTC 77539 Query 23862 AGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACT 23921 | ||||| || || ||||| || |||||| || || | ||||| |||||||| Sbjct 77538 TTCTATTTGAATCTCCTTTAAAAAATTTACAGCTAAGTTCTCCATTACAATTCCATCACT 77479 Query 23922 AGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC 23963 ||| ||||| || || | |||||||| ||||||||| |||| Sbjct 77478 AGCTGCAAAAAATGCTAAGACATATTTAATAAAATGTTTTTC 77437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521487119989000