Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq144 138 2e-27 >seq144 Length=702637 Score = 138 bits (152), Expect = 2e-27 Identities = 318/467 (68%), Gaps = 14/467 (3%) Strand=Plus/Plus Query 281550 ATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATACCACTTGAA 281609 || ||||| ||||||||| | || | | || |||||| || ||||||||| || | Sbjct 647635 ATATCTTTTGGATTATAATTAGGTACTGAACTACTCCAACCAGTACCAATACCATCTGTA 647694 Query 281610 CCATTTACCAAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATTTTATCACCA 281669 |||||||| ||||| | || || |||||||||||| || |||||||||| | |||| Sbjct 647695 CCATTTACTAAAATCATAGGAATTATAGGTACATAATATAAAGGTTCAATTTGTTGACCA 647754 Query 281670 TCATCATACAAAT-ACTTCAGAAGGTTATCATCTGTATCGACGAAAACCTGTCGCGTC-- 281726 |||||||| |||| | || | || | |||||||| || || | | || ||| Sbjct 647755 TCATCATATAAATAAGTTAATAATG-GATCATCTGCTTCTGGAAATATATATCTTGTCCA 647813 Query 281727 -TTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTG-GTCTTTACCACCCTGCA 281784 |||| || ||| ||||| ||||| | |||| | | || ||||||||||| | Sbjct 647814 TTTAG---ACAATTTTGTGAATATATAACGTGCA-GCACTTGCATCTTTACCACCTTCTT 647869 Query 281785 GCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAAT 281844 || ||||| ||||| ||| ||| | || | |||||| || || || ||| Sbjct 647870 TTCTACTACCAAATTGACCACATGGCTGCAATAAATTTAAGTTATTACTGCCAACAAAAT 647929 Query 281845 CCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGT 281904 || |||| || || || || | || | || ||||| || ||||| || || | Sbjct 647930 TTTGTGCCATATTTACAATAGTACTTTGTAAAGAAGATTCACCATGATGATATGCACTAT 647989 Query 281905 GTTCGGCAACATAACCACTGAACTGTGCTACCTTCACGTC-TGATGTCAAGTTGCGTTTG 281963 |||| ||||||||||| || || || || || | || | || | || || || Sbjct 647990 GTTCAGCAACATAACCTGCTAATTGAGCAACTTTAAGTTCATTATAT-AATTTTTTCTTA 648048 Query 281964 AAAG-CGCAATATAATACTTTTCGTTGAGAAGGCTTGAAACCATCAA 282009 |||| |||| |||||||||||| |||| ||| || | |||||||| Sbjct 648049 AAAGTAGCAA-ATAATACTTTTCTTTGACCAGGTTTAAGACCATCAA 648094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057822034761350