Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_000866.4 Length=168903 Score E Sequences producing significant alignments: (Bits) Value seq123 104 3e-17 >seq123 Length=148735 Score = 104 bits (114), Expect = 3e-17 Identities = 217/318 (68%), Gaps = 9/318 (3%) Strand=Plus/Plus Query 59793 ATGTTTTCTACACAAAGAAACATAAATT---TCATCACCAATACAAATTTGATTACCTTC 59849 ||| || | ||| | ||||| |||| || ||||||||||| ||||||| | ||| Sbjct 29606 ATGATTACGACAAACAGAAATATAATTTGATTCATCACCAATTAAAATTTGTTCTCCTGT 29665 Query 59850 TTTAACTGGTGTTCCATCTTCCATTAAT-CGAGCTGTCATAATCGCTTTTTTACCACAAT 59908 ||| ||| | |||| || || ||| | |||||| | ||||| |||||||||| Sbjct 29666 AGAAACAGGTTTGCCATATTT-ATCAATTCTTAATGTCATTGTAGCTTTCTTACCACAAT 29724 Query 59909 GACAAACTGCTTTTAGTTCAATAAGTTTATCTGCAATCGCTAAAAGTTCTTTAGAACCTT 59968 ||| | || ||||| ||||||||||||||| || || | ||| | ||| || Sbjct 29725 AACATATTGTTTTTATTTCAATAAGTTTATCAGCCCATGCAAGAAGATATTTGCTTCCAG 29784 Query 59969 CAAATAATTTTCCAGCGAAATCAGTCCTTAGCCCATAAGCCATA--ACAGGAACATTATA 60026 ||| |||||||| ||||| || |||| || ||| |||| ||||||| ||| Sbjct 29785 AAAACAATTTTCCTTGAAAATCTGTTCTTAAACCGTAA--CATAACACAGGAATATTTAG 29842 Query 60027 TGTATCAACAATTCGGCTCAATTGATGCACCTGTTCAGTTTTTAAAAACTGAGCTTCATC 60086 |||||||||| | || | || || || || ||||||| ||| |||||| Sbjct 29843 CTTATCAACAATAATACATGTATGTTTAACTTGATCTTTTGTTAAAAATTGACATTCATC 29902 Query 60087 TACAAATACGCAATGAAT 60104 || || ||| |||| ||| Sbjct 29903 TATAAGTACACAATCAAT 29920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540360620594600