Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq141 168 7e-37 >seq141 Length=88262 Score = 168 bits (186), Expect = 7e-37 Identities = 570/874 (65%), Gaps = 29/874 (3%) Strand=Plus/Plus Query 15901 AACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAA 15960 ||||||| |||| || |||| ||| | |||||| || || |||||||| || | | Sbjct 19850 AACACCCGCCATTTGATATTCACCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTGAAG 19909 Query 15961 AGATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAG 16020 ||| || ||||| ||||||| ||||||||| | |||| || || | || Sbjct 19910 AGAAATCAAATCCATCCAATCAAAAGGATTAGTAACATTGTATATTTTTGAAATATCAAG 19969 Query 16021 TTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGC-AATTAA 16079 | | ||||||||| ||||||||||| |||||||| ||| ||||| |||| | Sbjct 19970 AGCAACTAATAATCTATCAGCTACAAATTCAATATATTGTGTCAT-AAGTCTAGAATTCA 20028 Query 16080 TTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTT 16139 | || ||||| ||| || | || | |||||| | | ||| | |||| |||| Sbjct 20029 TACCAATAAGATCTACAGGTAAAGAATCACATAAAAAGTTTCTTTCAACATCAACAGCTT 20088 Query 16140 CTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGT--ATGG---TTTAGGTG-TTTAA 16193 || ||||| | | | || | ||| || || |||| ||| |||| Sbjct 20089 CT-----GATATAATTTGTT-GTACTCTAGAAATTGGTAATTTAAATTTAAGTGATTTAT 20142 Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 | |||| ||| || || || ||||| ||||| || | || || | ||| || |||| Sbjct 20143 AAATTAAACAAGCAAAATCTGCATGTAAACCTTCATCACGACTAATTAATTCATTAGAAA 20202 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCG 16313 | || | || |||||| ||| ||||| |||||||| ||||| ||| || || | Sbjct 20203 ATGTAAGACCAGGCATTAATCCACGTTTTTTTAACCAAAATATAGCACAGAAACTACCAG 20262 Query 16314 AAAAGAATATACCCTCAACAGATGCA---AAAGCGATTAATCGTTCCGCGTACGTAGCAT 16370 |||| || ||||| ||||| |||| || | ||||||| ||| || | | | || Sbjct 20263 AAAATAAAATACCTTCAAC---TGCACAGAATCCAATTAATCTTTCAGCAAATGAACGAT 20319 Query 16371 CTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATC--CATCGT 16428 | ||||| |||||||| | ||||||| ||||||| ||| | ||| ||| Sbjct 20320 CATTATTC---ATCCATTTTGTTGCCCATTCTGCTTTTTTTTTAACTGCATCAACATGAG 20376 Query 16429 TTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAG 16488 || || || | ||| || | | ||||| |||||| ||||||| ||| || || Sbjct 20377 TTATA--GCTTCAAATAACATTTGACGTTCCTTAATATCACTTATATATTGATCTATAAG 20434 Query 16489 TAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCG 16548 ||| || |||| |||||| | || || || || |||||| |||| | || Sbjct 20435 TAATGAATAAGTTTCATTGTGTATTTGTTCAATAGCCATTTGAAATGCATAATACATTCT 20494 Query 16549 AGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCC-GCCAGGTTCTCATTCACGATAC 16607 || || | ||||||| ||| | ||||| || | || || || || | || || | Sbjct 20495 TGCTTCAGTAATTTGTATTTCT-CTTAAAAAATTTACAGCAAGATTTTCCATAACAATTC 20553 Query 16608 CGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAA 16667 | ||||||||||||||||| || | | | ||||| |||| |||||| | | | | Sbjct 20554 CATCACTTGCAGCAAAAAATGCAAGAACATATTTAATAAAATGTTTTTCAGGATCTTTTA 20613 Query 16668 GAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAG 16727 | | ||||||| | | |||| || ||| | |||||| | |||||| || Sbjct 20614 AACTTCCCCAATCTCTCATGTCTTGACTTAAATCAATTTCTTCAGCTACCCAAAAAGAAG 20673 Query 16728 CCACTGCCTTTTTATACATTTTCCAAATATCATT 16761 | | || ||||| |||||| |||||| || || Sbjct 20674 CTTCAGCTTTTTTGTACATTGACCAAATTTCTTT 20707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511413473061400