Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq129 428 5e-115 seq141 248 1e-60 >seq129 Length=387383 Score = 428 bits (474), Expect = 5e-115 Identities = 1196/1819 (66%), Gaps = 42/1819 (2%) Strand=Plus/Plus Query 52847 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTG 52906 || || || ||||| || ||||| |||| || |||||||||||| | || || Sbjct 181528 TAATATATCCCCGTCTTAAGACCTTTTTTCCAGCCATAAAAATGCATAGAAGAAAGCTTC 181587 Query 52907 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 52966 | | || ||| || | | ||||| ||||||| ||||||| || || | | ||| Sbjct 181588 GCAAAATTCGCATTTTCCATATGTATATTCAGAGATTGAGACTGGCAAATATAAGGTCCT 181647 Query 52967 CTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AAC 53025 || ||||| ||||| | || | | ||||||| |||||||||| |||||||| || Sbjct 181648 CTATCTGCTGCCATGTCAATTACTGACTTTTGTTTGATTTCCCAAACTGTTTTATATAAA 181707 Query 53026 TCGCTTAATATCTTCTGGAAGG---TTTGTATTCTGAATAGATCCACCATCTACCATAAT 53082 | | || |||||||||||| | | |||| |||||| || | || || || Sbjct 181708 TTTCGTA-TATCTTCTGGAATACAATCTATATTTTGAATACTGCCGTTGT-TAGCA--AT 181763 Query 53083 CCTATTCT---TGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATG 53139 |||||| ||| ||||||||||||| | |||| || | | |||||||| Sbjct 181764 TATATTCTGTTTGAGACGATCATTCCATAATCCTAGCTCGAGCAAGTCATTCAGGAGATG 181823 Query 53140 CGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATA 53199 ||||| || | ||| || || || | ||||| ||| |||||||| ||| | Sbjct 181824 TGGATTCACGATGAAAAACTCGCCGGATAGAACTCTACGATGATAAATATTTGACGTAAA 181883 Query 53200 CGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 53259 || || | | |||||||||||||| || |||| || ||||| || ||||||||||| Sbjct 181884 AGGCTCGAAACTTTCATTATTTCCCAATATCTGAGAGGTAGATGCTGTGGGCATAGGTGC 181943 Query 53260 CACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATT 53319 || ||||| |||||| || || | | ||| || | ||| || | ||||||| Sbjct 181944 CAATAATAAGGAATTTCTTAGTCCATGCTTGGAGATCTTTTGTTTAAGTAGGTCCCAATC 182003 Query 53320 CCAAAGATCCGAC---GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC 53376 |||| | || ||| ||| ||||| |||||| ||||| || Sbjct 182004 GCAAATTCCTGAGTTAGGTTTAACTCCCCACATGTCAAATTGTAAAATACCTTTACTTGC 182063 Query 53377 GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTC 53436 || || | || || || || ||||| || || || |||| ||||||||| ||||| Sbjct 182064 AGGAGAACCCAAGTAGGTTTCATAAGGTCCATCTTTTTCTGCTAATTCACAACTAGCCTC 182123 Query 53437 TAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCC---AG 53493 ||| ||| ||||||| || | ||| || |||| |||| || || || ||| || Sbjct 182124 TAAGGCAGCGTAATAGATAGATTCAAAAATCTCAACGTTTA-ATTTTCTGGCTCCCTCAG 182182 Query 53494 GCTATCAAATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATAC 53552 || | |||| || ||| | || || ||||| | ||||||||||||||| | Sbjct 182183 ACT--CGTATGGC-AAGCGAAGCATCATGAAACAATCTGCAAGTCCTTGAACACCAATTC 182239 Query 53553 CGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATAT 53612 | | ||||| |||| | || || ||| ||| ||| | | ||| || ||||| Sbjct 182240 CTAAAGGTCGATGTTTTAGGTTGGAACTTTTGCTTTCAGGAGTTGAATAGTAGCCAATAT 182299 Query 53613 CTATAATTTTATTGAGGTTTCTG---ACAATTACTTTGACCACATCCTTCAGTTTGAGAA 53669 | ||||| ||||| | |||||| |||| ||||| || ||||| || ||| || Sbjct 182300 CAATAATCTTATTCAAGTTTCTAGTTACAAC--CTTTGTT-ACTTCCTTGAGCTTGTCAA 182356 Query 53670 AATCAAA-----TTGTCCATCTATTA-CAAACATGTTCAATGCAATAGATGCCAGATTAC 53723 ||||||| || || | ||| | ||||| || | | |||| ||||||| || | Sbjct 182357 AATCAAAAGTTTTTTTCTCTTTATCAACAAACTTGGGAAGTCCAATGGATGCCAAGTTGC 182416 Query 53724 AAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACT 53783 | || || | ||||| || | ||| | ||| ||||| || || || |||||| | Sbjct 182417 AGACAGCAATTTCATTTGCGCTAGTATACTCTATAATCTCTGTACAGAGGTTACTAGAAA 182476 Query 53784 TGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGA 53843 ||||| |||||||||| |||||||| |||| ||| || ||||| || ||| Sbjct 182477 CAATGGTGCCTAAATTTTTCTGATTACTTTTTTGATTAGCGGCGTCCTTGTAGCAAATAT 182536 Query 53844 ATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTA 53903 | || || || ||||| || || | || | || ||| | | ||||| | Sbjct 182537 AGGGAGTCCCCGTTTCTATTTGAGCTTGGAGTATAAGGAACCAAAGCTTCTGTGCCTTCA 182596 Query 53904 TTATAGAT-TTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCT 53962 || | | || | | || || |||| || | ||| ||| | ||| ||||| Sbjct 182597 TTGTCTTTCTTCCACGGCCTTGCT-TTTCATAATCTTCATATAATTTTCTAAAATCGTCA 182655 Query 53963 CCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCA 54022 |||||||||| | | |||| | |||||||| || ||||| | | ||| ||| ||| Sbjct 182656 CCCCAAACATCTTGAAGTCCACGGCATTCATCAGGGCACATAAGGGTCCAGTCTTGATCA 182715 Query 54023 TCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTT 54082 | | |||| || |||||| | ||| |||| ||| ||||| || ||||| | | | Sbjct 182716 TTTTCAACTCTTTCCATAAATAAATCGGGAACCCATAGAGCAGGGAAAAGATCACGGCAT 182775 Query 54083 CTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGC 54142 || ||| || || || ||| ||| | | || | ||| | | || |||| |||| Sbjct 182776 CTCATTTCTTCCTTGCCATGATTTTTTCTGATTTCTATGAATTCAACAACATCAACATGC 182835 Query 54143 CACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCC---TGATCTATG 54199 || || ||||||||||| | || |||| | | | ||||| || || || || Sbjct 182836 CAAGGCTCCAAGTATATTGCAATCGCTCC---CTTTCTCTTTCCCCCACCTTGGTCGATA 182892 Query 54200 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTG 54259 ||||| || || | ||||||||| | | ||||||||| | |||||| || ||||| Sbjct 182893 TATCTTGCAGTATCATTATAAACACGTAGCATTGGAATCAAACCATTTGACCTTCCATTA 182952 Query 54260 GTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCT 54319 || || ||||| ||| | ||||||||||||| | | | ||||| ||| || Sbjct 182953 GTACCTCTTATATAAGATCCTGTACCACGAATATTACTCACCGCAATACCTAGCCCACCA 183012 Query 54320 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 54379 ||| |||| || |||||| | | || |||||| |||| || | ||| || Sbjct 183013 GCCGTTTTGCTAATATTTGCGCACTTTGTCAAAGTATCAAAGATTCCATTTATCGAGTCC 183072 Query 54380 TCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 54439 ||| || |||||| ||||| ||||| || ||||| ||| || ||||||||| Sbjct 183073 TCCGCAATCCTAAGTAAGAAACAAGAGGACATCTGTGGACGAGGAGTACCTGCATTAAAT 183132 Query 54440 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCT 54499 || || || | || || ||||| | || | || || || | || ||||| || || Sbjct 183133 AAAGTCGGCGTGGCATGAGTAAAATACTTCTGTGATAGCAGTTCATAAGTCTCAATTGCC 183192 Query 54500 GAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 54559 || |||| ||| | ||| ||||| || || | ||||| || |||||| ||||| Sbjct 183193 GAATCTAAATCACCGCAATGTATTCCGCAAGCAACTCTCATTAGCAAGTGCTGTGGTCTC 183252 Query 54560 TCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 54619 ||||| ||||||| | | | ||| || |||||| | || | |||||| || ||||| Sbjct 183253 TCAACTATCTTGTCATCCACTCTCAATAAATAGGATCTCTCAAGAGTTTTGAATGCAAAA 183312 Query 54620 TAGTTGTATGAAAAGTCTC 54638 |||| ||| |||||||| Sbjct 183313 TAGTCGTACTCAAAGTCTC 183331 >seq141 Length=88262 Score = 248 bits (274), Expect = 1e-60 Identities = 590/863 (68%), Gaps = 34/863 (4%) Strand=Plus/Plus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 |||||| ||| |||| |||||||| || | |||||| ||||||||||||||||||| Sbjct 19847 CATAACACCCGCCATTTGATATTCACCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTG 19906 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCC 23950 | || || ||||| |||| | ||||| |||||||| || ||| ||| |||| Sbjct 19907 AAGAGAAATCAAATCCATCCAATCAAAAGGATTAGTAACATTGTATATT-TTTGAAATAT 19965 Query 23951 CAA-TTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAAT 24009 ||| || | |||||||| || ||||| || |||||| | |||| | | | ||| Sbjct 19966 CAAGAGCAACTAATAATCTATCAGCTACAAATTCAATATATTGTGTCATAAGTCTAGAAT 20025 Query 24010 TCATTCCTATAAGTTTAACTGG--AAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 24067 |||| || ||||| | || || |||| |||| ||| ||| | | ||||| | || Sbjct 20026 TCATACCAATAAGATCTACAGGTAAAGAATCACA-TAA-AAAGTTTCTTTCAACATCAAC 20083 Query 24068 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAA--TAAATG-TTT 24124 || |||| |||||| | |||| | | | ||| | || ||| || ||| Sbjct 20084 AGCTTCTGATATAATTTGTTGTACTCT---AGAAATTGGTAATTTAAATTTAAGTGATTT 20140 Query 24125 AAACATCAAACATGCGAAATC-GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 24183 | | || ||||| || ||||| ||| |||| ||| || || | |||||||||||| || | Sbjct 20141 ATAAATTAAACAAGCAAAATCTGCA-TGTAAACCTTCATCACGACTAATTAATTCATTAG 20199 Query 24184 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT-GGACGCAAATGAT 24242 |||| || || || ||||||| ||||| ||||| | ||||||||| | || ||| | Sbjct 20200 AAAATGTAAGACCAGGCATTAATCCACGTTTTTTTAACCAAAATATAGCACAGAAACTA- 20258 Query 24243 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG 24302 |||||||| ||||| ||||| ||||| || |||| | |||||| || || || Sbjct 20259 CCAGAAAATAAAATACCTTCAACTGCACAGAATCCAATTAATCTTTCAGCA-AATGAACG 20317 Query 24303 CT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC----ACAAGGCATTG 24357 | | || ||||| ||| ||||| || || || ||||| || ||| || || Sbjct 20318 ATCATTATTCATCCATTTTGTTGCCCATTCTGCTTTTTTTTTAACTGCATCAA--CA-TG 20374 Query 24358 TCTCTATAGCATTAAAGAGATAGtt-tttttCATTACTATCTTTAACATATGTATCAATC 24416 | |||||| | ||| | | | || ||| ||| |||| | | |||| ||| || Sbjct 20375 AGT-TATAGCTTCAAATA-ACATTTGACGTTCCTTAATATCACTTATATATTGATCTATA 20432 Query 24417 A--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAAC 24474 | || || ||| |||| || || | |||||| |||||||||||| | || | || Sbjct 20433 AGTAATGA--ATAAGTTTCATTGTGTATTTGTTCAATAGCCATTTGAAATGCATA-ATAC 20489 Query 24475 A-TCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACT 24533 | ||| || || ||||| |||| |||| | |||| | | || | |||||| | || Sbjct 20490 ATTCTTGCTTCAGTAATTTGTATTTCTCTTAAAAAATTTACAGCAAGATTTTCCATAACA 20549 Query 24534 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 24593 ||||| ||||| || |||||||| || | |||| ||| ||||||| |||||| | Sbjct 20550 ATTCCATCACTTGCAGCAAAAAATGCAAGAACATATTTAATAAAATGTTTTTCAGGATCT 20609 Query 24594 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 24653 ||| | |||||| | || |||| | || ||| | |||||| || |||||| Sbjct 20610 TTTAAACTTCCCCAATCTCTCATGTCTTGACTTAAATCAATTTCTTCAGCTACCCAAAAA 20669 Query 24654 GATGCCTCTGCCTTTTTATACAT 24676 || || || || ||||| ||||| Sbjct 20670 GAAGCTTCAGCTTTTTTGTACAT 20692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720523879600