Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq120 212 9e-50 seq93 178 2e-39 seq130 109 8e-19 >seq120 Length=60016 Score = 212 bits (234), Expect = 9e-50 Identities = 192/239 (80%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | |||||||| ||||| |||||||| || ||||| | ||| || Sbjct 31410 ATGCAAATTTTTGTTAAGACACTTACAGGGAAAACTATCACATTAGAGGTGGAACCATCA 31469 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| ||||| || |||||||||||||| |||||||| || |||||||| Sbjct 31470 GATACAATTGAAAATGTTAAAGCA-AAAATTCAAGATAAGGAAGGTATTCCTCCTGATCA 31528 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || |||||||| |||||||| || ||| |||| || ||| |||||||| Sbjct 31529 ACAACGTTTAATATTTGCAGGGAAACAATTGGAAGATGGTCGTACTTTATCTGATTATAA 31588 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||| |||||||| ||||| ||||| ||||||||| | |||||||||| ||| || Sbjct 31589 TATTCAGAAAGAATCTACTTTACATTTAGTTTTACGTCTTAGAGGTGGTATGCAAATTT 31647 Score = 203 bits (224), Expect = 5e-47 Identities = 190/239 (79%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || ||||| || ||||| || |||| | ||| || Sbjct 31638 ATGCAAATTTTTGTTAAGACTCTTACAGGAAAGACTATTACATTAGAAGTAGAACCATCA 31697 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| ||||| || |||||||||||||| |||||||| || |||||||| Sbjct 31698 GATACAATTGAAAATGTTAAAGCA-AAAATTCAAGATAAGGAAGGTATTCCTCCTGATCA 31756 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || ||||||||||||||||| || ||| |||| || ||| |||||||| Sbjct 31757 ACAACGTTTAATATTTGCAGGAAAACAATTGGAAGATGGTCGTACTTTATCTGATTATAA 31816 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||| |||||||| ||||| ||||| ||||||||| | |||||||||| ||| || Sbjct 31817 TATTCAGAAAGAATCTACTTTACATTTAGTTTTACGTCTTAGAGGTGGTATGCAAATTT 31875 Score = 203 bits (224), Expect = 5e-47 Identities = 190/239 (79%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || ||||| || ||||| || |||| | ||| || Sbjct 31866 ATGCAAATTTTTGTTAAGACTCTTACAGGAAAGACTATTACATTAGAAGTAGAACCATCA 31925 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| ||||| || |||||||||||||| |||||||| || |||||||| Sbjct 31926 GATACAATTGAAAATGTTAAAGCA-AAAATTCAAGATAAGGAAGGTATTCCTCCTGATCA 31984 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || ||||||||||||||||| || ||| |||| || ||| |||||||| Sbjct 31985 ACAACGTTTAATATTTGCAGGAAAACAATTGGAAGATGGTCGTACTTTATCTGATTATAA 32044 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||| |||||||| ||||| ||||| ||||||||| | |||||||||| ||| || Sbjct 32045 TATTCAGAAAGAATCTACTTTACATTTAGTTTTACGTCTTAGAGGTGGTATGCAAATTT 32103 Score = 194 bits (214), Expect = 3e-44 Identities = 183/231 (79%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || ||||| || ||||| || |||| | ||| || Sbjct 32094 ATGCAAATTTTTGTTAAGACTCTTACAGGAAAGACTATTACATTAGAAGTAGAACCATCA 32153 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| ||||| || |||||||||||||| |||||||| || |||||||| Sbjct 32154 GATACAATTGAAAATGTTAAAGCA-AAAATTCAAGATAAGGAAGGTATTCCTCCTGATCA 32212 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || ||||||||||||||||| || ||| |||| || ||| |||||||| Sbjct 32213 ACAACGTTTAATATTTGCAGGAAAACAATTGGAAGATGGTCGTACTTTATCTGATTATAA 32272 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| |||||||| ||||| |||||||| | ||| | |||||||||| Sbjct 32273 TATTCAGAAAGAATCCACTTTACATTTGGTCCTGCGTCTTAGAGGTGGTAT 32323 >seq93 Length=13655 Score = 178 bits (196), Expect = 2e-39 Identities = 489/731 (67%), Gaps = 24/731 (3%) Strand=Plus/Plus Query 205308 ATCTACTTGTCtttttatttttaattttGGAAATGGGTTTGGTGTACGTTCTAATTGttt 205367 ||||| || |||||| | | |||||| |||||||| | || ||||| |||||||| Sbjct 4100 ATCTATTTCTCTTTTAAATCTTAATTGAGGAAATGGTCTAGGAAGACGTTTTAATTGTTC 4159 Query 205368 ttttAATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTC 205427 ||| | | || || |||||| |||| ||||| |||| ||||||| | ||| | ||| Sbjct 4160 TTTAAGTTGATCAAGATGATTTTCATAAATATGAGCATCACCAATAAAAATAATTAGTTC 4219 Query 205428 ATATGGTTTTAAATTAGTTAAATGTGCAATCAT-ATAAGTCAATAAACTATAACTAGCAA 205486 | || || || | | ||||| | ||| ||| | || | |||| |||| Sbjct 4220 ACCAGGCTTATAACCACAAACTTGTGCTAACATCATACAT-AACATTGCATAAGATGCAA 4278 Query 205487 CATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACAT--TTGACATGTAAG 205544 ||||||||| |||||||| | |||| ||||||||| | | || | ||| Sbjct 4279 TATTAAATGGAGATCCTAAACCTAAATCACAACTTCTTTGATATAAAGTAGA-ACATAAT 4337 Query 205545 ATATTTATTATTAATTACATGAAATTGT-ACAAAACAATGACAAGGTGGTATAACCATAT 205603 ||||| | |||| || | | |||| | || ||| ||||| ||||||| |||| | Sbjct 4338 CTATTT-TCATTATCAACGTAATATTGAGATAAGACA-TGACATGGTGGTAATGCCAT-T 4394 Query 205604 TTTCAACATCTATA-GGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattt 205662 | | || | | |||||||| ||||| | ||| |||| || ||| |||||| Sbjct 4395 TGAGATAATGCAGATGGATTCCAAGCTGTAAGTATATGCCTTCTTTCTTTAGGATTATTT 4454 Query 205663 tttattttattta--tAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTAT 205720 |||| | ||| | |||| | | ||||||||||| || | | |||||| || Sbjct 4455 TTTAATG-ATTCAATTAATTTA-GATAATTGATCAACACCAACACCTTGATAATTATCAT 4512 Query 205721 CCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAAT 205780 ||| |||||| || |||||||||||||||||||||||| | ||| ||||||| Sbjct 4513 GCATTGTTTTATATTCTCCATTAAAATGACGCCATTGAAAACCATATATTGGTCCTAAAT 4572 Query 205781 CACCTTCTTTTCTATCATTAAAACCACGtttttttatatattttaatgatccattttcat 205840 || ||||| ||||| |||||| ||||| || ||||| | || |||||| | Sbjct 4573 CATTTTCTTCTCTATGTCCTAAACCAATTTTTTCTAAATATTCTTTAGAACCATTTCCTG 4632 Query 205841 cccaaatatggattcctttatttt---ttaGAATATTTGTATTAGTTGATCCAGATATAA 205897 |||||||| | |||| |||| ||| | ||| ||| || || |||| Sbjct 4633 ACCAAATATAAA---CTTTTTTTTCAATTAAATGATTACCATTTGTATCACCTTTAATAA 4689 Query 205898 ACCATAATAATTCTTCAACAATTCCTCTCCAA--AACATTGATTTTGTTGTAAATAATGG 205955 |||| | ||||||||||| ||| |||| | ||| || ||| ||||| |||||||| Sbjct 4690 ACCACATTAATTCTTCAAATATTGCTCTAATAGCAACTTT--TTTAGTTGTTAATAATGG 4747 Query 205956 AAATGAATCATCTAATTTATATTTCATAGTTAAACCATATACAGTTTTTGTATCTACACC 206015 |||||| || ||| | | | ||| || ||| ||| | | ||||| | ||| Sbjct 4748 AAATGATTCTCTTAAATCAAAACGCATCATTTGTCCAAATATTGAATATGTATTAATACC 4807 Query 206016 TGTTCTATTTT 206026 |||||||||| Sbjct 4808 CGTTCTATTTT 4818 >seq130 Length=374773 Score = 109 bits (120), Expect = 8e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| |||| |||||||||||||| || || ||| | ||| | || | Sbjct 264909 AATGCAGATCTTTGTAAAAACACTAACAGGCAAGACCATTACTTTGGAGGTCGAGCCCTC 264968 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| || ||||| || || || || || || |||||||| Sbjct 264969 TGATACTATTGAAAATGTCAAAGCTAAGATTCAGGACAAGGAGGGAATTCCTCCTGATCA 265028 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || ||||| || |||||||| || ||| | |||| | || ||||| Sbjct 265029 ACAGCGTTTGATCTTTGCTGGTAAACAATTGGAAGATGGCAGAACTCTTTCGGACTATAA 265088 Query 124718 TATTCAAAAAGAATCAACTTTGCAT 124742 |||||| || ||||| || || ||| Sbjct 265089 TATTCAGAAGGAATCTACCTTACAT 265113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755454630736000