Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq141 309 3e-79 >seq141 Length=88262 Score = 309 bits (342), Expect = 3e-79 Identities = 592/857 (69%), Gaps = 19/857 (2%) Strand=Plus/Plus Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 |||||||||||| |||||| |||||||| ||||| ||||| |||| | ||||| | Sbjct 19861 TTTGATATTCACCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTGAAGAGAAATCAAAT 19920 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAG-TATTTATCGCATCCCAATTCCAAC-AA 16062 |||| ||||||||||||| | |||| | ||||| | || ||| |||| || Sbjct 19921 CCATCCAATCAAAAGGATTAGT--AACATTGTATATTTTTGAAATATCAAGAGCAACTAA 19978 Query 16063 TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATC-ACAGTTCATTCCTATTA 16121 ||||||||| || |||||||| ||||| ||| |||| || || | | ||||| || || | Sbjct 19979 TAATCTATCAGCTACAAATTCAATATATTGTGTCAT-AAGTCTAGAATTCATACCAATAA 20037 Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181 | ||||| | | || |||||| ||| |||| | || ||| ||||| |||| Sbjct 20038 GATCTACAGGTAAAGAATCACATAAAAAGTTTCTTTCAACATCAACAGCTTC--TGATAT 20095 Query 16182 TATCTCTTACTACACTATTTAACGGAGGGTTTAAT--AAGTG-TTTAAACATTATACAAG 16238 || | || ||| ||| | || || ||| ||||| |||| | |||| ||||| Sbjct 20096 AATTTGTTG-TACTCTAGAAATTGGTAATTTAAATTTAAGTGATTTATAAATTAAACAAG 20154 Query 16239 CAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTG 16298 ||||||| ||| || ||||| || | ||| ||||| || || |||||||||||||| | Sbjct 20155 CAAAATCTGCATGTAAACCTTCATCACGACTAATTAATTCATTAGAAAATGTAAGACCAG 20214 Query 16299 GCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATAC 16358 |||||| ||| |||||||| | |||||||||||| || ||||||||| || |||| Sbjct 20215 GCATTAATCCACGTTTTTTTAACCAAAATATAGCACAGAAACTACCAGAAAATAAAATAC 20274 Query 16359 CTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatcc 16418 |||||||||| ||| ||| |||| ||| | | | | || ||| ||| |||| Sbjct 20275 CTTCAACTGCACAGAATCCAATTAATCTTTCAGCAAATGAACGATCATTA--TTC-ATCC 20331 Query 16419 attttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478 ||||| | ||||| | |||||||| |||||| | | | ||| || | ||||| Sbjct 20332 ATTTTGTTGCCCATTCTGCTTTTTTTTTAACTGCATCAACATGAGTTATAGCTTCAAATA 20391 Query 16479 AATAAttt--ttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTC 16536 | |||| ||| || |||| ||||| |||||| ||||| ||| |||| Sbjct 20392 A--CATTTGACGTTCCTTAATATCACTTATATATTGATCTATAAGTAATGAATAAGTTTC 20449 Query 16537 TGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTG 16596 || || | || || || || ||||| ||||| | ||| ||||| | ||||| Sbjct 20450 ATTGTGTATTTGTTCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCAGTAATTTG 20509 Query 16597 TACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAA 16656 || ||| |||| || | || | ||||| |||| |||||||| || || ||||| Sbjct 20510 TATTTCTCTTAAAAAATTTACAGCAAGATTTTCCATAACAATTCCATCACTTGCAGCAAA 20569 Query 16657 AAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGA 16716 ||| ||||| | | ||||||||||| |||||| |||| | || ||| || Sbjct 20570 AAATGCAAGAACATATTTAATAAAATGTTTTTCAGGATCTTTTAAACTTCCCCAATCTCT 20629 Query 16717 AAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATA 16776 | |||| |||||| | ||||| | |||||||||||| |||| ||||| || Sbjct 20630 CATGTCTTGACTTAAATCAATTTCTTCAGCTACCCAAAAAGAAGCTTCAGCTTTTTTGTA 20689 Query 16777 CATTTTCCATATGTCTT 16793 |||| ||| || |||| Sbjct 20690 CATTGACCAAATTTCTT 20706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511161697000