Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq141 297 2e-75 >seq141 Length=88262 Score = 297 bits (328), Expect = 2e-75 Identities = 600/877 (68%), Gaps = 29/877 (3%) Strand=Plus/Plus Query 13901 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13960 ||||| ||| |||||||||||| ||||||||||||||| || ||||||||||||| Sbjct 19848 ATAACACCCGCCATTTGATATTCACCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTGA 19907 Query 13961 AGTGATATATTTTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACA-ACC 14019 || || || ||||| ||||||| ||||| || |||| ||| | | | | | Sbjct 19908 AGAGAAATCAAATCCATCCAATCAAAAGGATTAGTA-ACATTGTATATTTTTGAAATATC 19966 Query 14020 TAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATC-ACAAT 14078 || | | || ||||||||| || | || ||||||||||| | ||| || || | ||| Sbjct 19967 AAGAGCAACTAATAATCTATCAGCTACAAATTCAATATATTGTGTCAT-AAGTCTAGAAT 20025 Query 14079 TCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAG 14138 ||||||| || || | |||||| | || |||||| | | |||| | | |||| Sbjct 20026 TCATACCAATAAGATCTACAGGTAAAGAATCACATAAAAAGTTTCTTTCAACATCAACAG 20085 Query 14139 CCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTT-----TAGATG-TT 14192 | || |||||| | || || | | |||| || |||| || || || Sbjct 20086 CTTCTGATATAAT--TTGTTGTACTCT----AGAAATTGGTAATTTAAATTTAAGTGATT 20139 Query 14193 TAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTG 14252 || |||||||||| |||||||| ||| | || ||||| | |||||| | ||| || | Sbjct 20140 TATAAATTAAACAAGCAAAATCTGCATGTAAACCTTCATCACGACTAATTAATTCATTAG 20199 Query 14253 AAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATC 14312 ||||||| | || ||||| ||||| |||||||||||||||||||| ||| ||| | Sbjct 20200 AAAATGTAAGACCAGGCATTAATCCACGTTTTTTTAACCAAAATATAGCACAGAAACTAC 20259 Query 14313 CGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTT 14372 | ||||| || || || ||||||||| || | ||||||| ||| |||| || | Sbjct 20260 CAGAAAATAAAATACCTTCAACTGCACAGAATCCAATTAATCTTTCAGCAAATGAACGAT 20319 Query 14373 TTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC--CATTGT 14430 || ||| ||||||||| | |||||||| | ||||||||||| ||| ||| Sbjct 20320 CATTATTC---ATCCATTTTGTTGCCCATTCTGCTTTTTTTTTAACTGCATCAACATGAG 20376 Query 14431 TTCAATAGCATTAAATAA-ATGTTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAAT 14487 || ||||| | |||||| || | | | ||| || |||| || ||| ||| || Sbjct 20377 TT--ATAGCTTCAAATAACATTTGACGTTCCTTAATATCACTT---ATATATTGATCTAT 20431 Query 14488 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACA 14547 |||||| ||| ||||| |||||| | ||| ||||| || ||||| ||||| | Sbjct 20432 AAGTAATGAATAAGTTTCATTGTGTATTTGTTCAATAGCCATTTGAAATGCATAATACAT 20491 Query 14548 TCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTAT 14607 ||| ||||| | ||||| ||| |||| || | || | |||||| |||| || Sbjct 20492 TCTTGCTTCAGTAATTTGTATTTCTCTTAAAAAATTTACAGCAAGATTTTCCATAACAAT 20551 Query 14608 ACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCT 14667 |||||||| || ||||||||||| | | | ||||||||| | || || || | Sbjct 20552 TCCATCACTTGCAGCAAAAAATGCAAGAACATATTTAATAAAATGTTTTTCAGGATCTTT 20611 Query 14668 GAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACT 14727 | || |||||| | || | | | ||| | ||| ||| || ||||||| Sbjct 20612 TAAACTTCCCCAATCTCTCATGTCTTGACTTAAATCAATTTCTTCAGCTACCCAAAAAGA 20671 Query 14728 AGCAACAGCTTTTTTATACATTACCCATATTTCTTTA 14764 ||| |||||||||| |||||| ||| ||||||||| Sbjct 20672 AGCTTCAGCTTTTTTGTACATTGACCAAATTTCTTTA 20708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482344725748600