Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq120 107 2e-18 seq129 102 7e-17 seq141 95.1 1e-14 >seq120 Length=60016 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| ||||| || || || || | || || ||||| || Sbjct 32094 ATGCAAATTTTTGTTAAGACTCTTACAGGAAAGACTATTACATTAGAAGTAGAACCATCA 32153 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | ||| || |||||||| | || || || || Sbjct 32154 GATACAATTGAAAATGTTAAAGCAAAAATTCAAGATAAGGAAGGTATTCCTCCTGATCAA 32213 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| ||||||| || || ||||| |||||||| | ||| | |||||||| Sbjct 32214 CAACGTTTAATATTTGCAGGAAAACAATTGGAAGATGGTCGTACTTTATCTGATTATAAT 32273 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| |||||||| ||| | ||| |||| || | || || || |||| Sbjct 32274 ATTCAGAAAGAATCCACTTTACATTTGGTCCTGCGTCTTAGAGGTGGTA 32322 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 31180 AATTGAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGA 31239 |||| || || ||||||||||| || ||||| || ||||| ||||| ||||| | || Sbjct 31397 AATTTTATTAAGGATGCAAATTTTTGTTAAGACACTTACAGGGAAAACTATCACATTAGA 31456 Query 31240 CGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGT 31299 || ||||| || || | | |||| || ||| | ||| || |||||||| | Sbjct 31457 GGTGGAACCATCAGATACAATTGAAAATGTTAAAGCAAAAATTCAAGATAAGGAAGGTAT 31516 Query 31300 GCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTAT 31359 || || || || || ||| ||||||| || || ||||| |||||||| | ||| | Sbjct 31517 TCCTCCTGATCAACAACGTTTAATATTTGCAGGGAAACAATTGGAAGATGGTCGTACTTT 31576 Query 31360 GAGCGATTATAACATTCAAAAAGAATCGACTCTTCAT 31396 |||||||| ||||| |||||||| ||| | ||| Sbjct 31577 ATCTGATTATAATATTCAGAAAGAATCTACTTTACAT 31613 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| ||||| || || || || | || || ||||| || Sbjct 31638 ATGCAAATTTTTGTTAAGACTCTTACAGGAAAGACTATTACATTAGAAGTAGAACCATCA 31697 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | ||| || |||||||| | || || || || Sbjct 31698 GATACAATTGAAAATGTTAAAGCAAAAATTCAAGATAAGGAAGGTATTCCTCCTGATCAA 31757 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| ||||||| || || ||||| |||||||| | ||| | |||||||| Sbjct 31758 CAACGTTTAATATTTGCAGGAAAACAATTGGAAGATGGTCGTACTTTATCTGATTATAAT 31817 Query 31373 ATTCAAAAAGAATCGACTCTTCAT 31396 ||||| |||||||| ||| | ||| Sbjct 31818 ATTCAGAAAGAATCTACTTTACAT 31841 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| ||||| || || || || | || || ||||| || Sbjct 31866 ATGCAAATTTTTGTTAAGACTCTTACAGGAAAGACTATTACATTAGAAGTAGAACCATCA 31925 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | ||| || |||||||| | || || || || Sbjct 31926 GATACAATTGAAAATGTTAAAGCAAAAATTCAAGATAAGGAAGGTATTCCTCCTGATCAA 31985 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| ||||||| || || ||||| |||||||| | ||| | |||||||| Sbjct 31986 CAACGTTTAATATTTGCAGGAAAACAATTGGAAGATGGTCGTACTTTATCTGATTATAAT 32045 Query 31373 ATTCAAAAAGAATCGACTCTTCAT 31396 ||||| |||||||| ||| | ||| Sbjct 32046 ATTCAGAAAGAATCTACTTTACAT 32069 >seq129 Length=387383 Score = 102 bits (112), Expect = 7e-17 Identities = 492/781 (63%), Gaps = 23/781 (3%) Strand=Plus/Plus Query 22408 ATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAA 22467 ||| ||||| || || | || ||| || || | ||||| | ||||| | ||| Sbjct 181782 ATCATTCCATAATCCTAGCTCGAGCAAGTCATTCAGGAGATGTGGATTCACGATGAAAAA 181841 Query 22468 CTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATT 22527 ||||||||| | || | || || ||||| || || || || || |||||| |||||| Sbjct 181842 CTCGCCGGATAGAACTCTACGATGATAAATATTTGACGTAAAAGGCTCGAAACTTTCATT 181901 Query 22528 GTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCT 22587 ||||||| |||||||| ||| || || || ||||| || ||||| | || || ||||| Sbjct 181902 ATTTCCCAATATCTGAGAGGTAGATGCTGTGGGCATAGGTGCCAATAATAAGGAATTTCT 181961 Query 22588 CAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGA---CGG 22644 | || ||||| || || || || || | ||| || || | | || || Sbjct 181962 TAGTCCATGCTTGGAGATCTTTTGTTTAAGTAGGTCCCAATCGCAAATTCCTGAGTTAGG 182021 Query 22645 CGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTA 22704 | || ||||||| || |||| || | || ||| || || || ||| Sbjct 182022 TTTAAC---TCCCCACATGTCAAATTGTAAAATACCTTTACTTGCAGGAGAACCCAAGTA 182078 Query 22705 CGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATA 22764 ||||| || || |||| | | | || | ||| || || ||||| || || ||||||| Sbjct 182079 GGTTTCATAAGGTCCATCTTTTTCTGCTAATTCACAACTAGCCTCTAAGGCAGCGTAATA 182138 Query 22765 TATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATACG 22824 |||| || || || | ||| |||| ||| | | ||||| |||| || Sbjct 182139 GATAGATTCAAAAATCTCAACGTTTAATTTTCTGGCTCCCTCAGACTCGTATGGCAAGCG 182198 Query 22825 CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAG 22884 | ||||| ||| || || | || ||||| || || || | ||||| | ||| || Sbjct 182199 AAGCATCATGAAACAATCTGCAAGTCCTTGAACACCAATTCCTAAAGGTCGATGTTTTAG 182258 Query 22885 ATTCGACACTTTTGC-CTCGGGCAAAGGATA----CCAATTCGAATCGATTGTTCTGTTC 22939 || || |||||||| || || | ||| ||||| ||| || | | ||| Sbjct 182259 GTTGGA-ACTTTTGCTTTCAGGAGTTGAATAGTAGCCAAT----ATCAATAATCTTATTC 182313 Query 22940 AAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACG-----C 22994 |||||||| || |||| || |||| ||||| || ||| | Sbjct 182314 AAGTTTCTAGTTACAACCTTTGTTACTTCCTTGAGCTTGTCAAAATC--AAAAGTTTTTT 182371 Query 22995 CCGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGT 23054 | || ||||||||||| | | || || || | ||||| || || | || | Sbjct 182372 TCTCTTTATCAACAAACTTGGGAAGTCCAATGGATGCCAAGTTGCAGACAGCAATTTCAT 182431 Query 23055 CTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAAT 23114 | | || ||||||| ||| || ||||| || || ||| | || ||||| |||| Sbjct 182432 TTGCGCTAGTATACTCTATAATCTCTGTACAGAGGTTACTAGAAACAATGGTGCCTAAAT 182491 Query 23115 TGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCT 23174 | |||| || |||||| |||| | ||||||||| || || || || ||||| | Sbjct 182492 TTTTCTGATTACTTTTTTGATTAGCGGCGTCCTTGTAGCAAATATAGGGAGTCCCCGTTT 182551 Query 23175 C 23175 | Sbjct 182552 C 182552 >seq141 Length=88262 Score = 95.1 bits (104), Expect = 1e-14 Identities = 189/280 (68%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 57566 AGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGA 57625 ||| |||||| ||||||||||| || ||||| || |||||| | |||||| | || Sbjct 20705 AGAAATTTGGTCAATGTACAAAAAAGCTGAAGCTTCTTTTTGGGTAGCTGAAGAAATTGA 20646 Query 57626 CCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAA 57685 | | | || |||| ||||||| | ||||| |||| | | |||||||||| Sbjct 20645 TTTAAGTCAAGACATGAGAGATTGGGGAAGTTTAAAAGATCCTGAAAAACATTTTATTAA 20586 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745 | | || | || ||||| || ||| ||||| ||||||| || ||| | | | || Sbjct 20585 ATATGTTCTTGCATTTTTTGCTGCAAGTGATGGAATTGTTATGGAAAATCTTGCTGTAAA 20526 Query 57746 ATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCAT 57805 |||| | |||| | ||| | || || || ||| | ||| | ||||||| |||| || Sbjct 20525 TTTTTTAAGAGAAATACAAATTACTGAAGCAAGAATGTATTATGCATTTCAAATGGCTAT 20466 Query 57806 TGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGAT 57845 |||| | | || |||| ||||| |||| || ||| Sbjct 20465 TGAACAAATACACAATGAAACTTATTCATTACTTATAGAT 20426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765592048400