Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq129 399 3e-106 seq141 221 2e-52 >seq129 Length=387383 Score = 399 bits (442), Expect = 3e-106 Identities = 1191/1818 (66%), Gaps = 40/1818 (2%) Strand=Plus/Plus Query 62085 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG 62144 || || || ||||| || ||||| |||| || |||||||||||| | || || Sbjct 181528 TAATATATCCCCGTCTTAAGACCTTTTTTCCAGCCATAAAAATGCATAGAAGAAAGCTTC 181587 Query 62145 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 62204 | | || ||| || | | ||||| ||||||| ||||||| || || | | ||| Sbjct 181588 GCAAAATTCGCATTTTCCATATGTATATTCAGAGATTGAGACTGGCAAATATAAGGTCCT 181647 Query 62205 CTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AAC 62263 || ||||| ||||| | || | | ||||||| |||||||||| |||||||| || Sbjct 181648 CTATCTGCTGCCATGTCAATTACTGACTTTTGTTTGATTTCCCAAACTGTTTTATATAAA 181707 Query 62264 TCGCTTAATATCTTCTGGAAGG---TTTGTATTCTGAATGGATCCACCATCTACCATAAT 62320 | | || |||||||||||| | | |||| ||||| || | || || || Sbjct 181708 TTTCGTA-TATCTTCTGGAATACAATCTATATTTTGAATACTGCCGTTGT-TAGCA--AT 181763 Query 62321 CCTATTCT---TGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATG 62377 |||||| ||| ||||||||||||| | |||| || | | |||||||| Sbjct 181764 TATATTCTGTTTGAGACGATCATTCCATAATCCTAGCTCGAGCAAGTCATTCAGGAGATG 181823 Query 62378 CGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATA 62437 || || || | || || || || | ||||| ||| |||||||| ||| | Sbjct 181824 TGGATTCACGATGAAAAACTCGCCGGATAGAACTCTACGATGATAAATATTTGACGTAAA 181883 Query 62438 CGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62497 || || | |||||||||||||| || |||| || ||||| || ||||||||||| Sbjct 181884 AGGCTCGAAACTTTCATTATTTCCCAATATCTGAGAGGTAGATGCTGTGGGCATAGGTGC 181943 Query 62498 CACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATT 62557 || ||||| |||||| || || | | ||| || | ||| || | ||||||| Sbjct 181944 CAATAATAAGGAATTTCTTAGTCCATGCTTGGAGATCTTTTGTTTAAGTAGGTCCCAATC 182003 Query 62558 CCAAAGATCCGAC---GGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC 62614 |||| | || ||| ||| | |||||| |||||| ||||| || Sbjct 182004 GCAAATTCCTGAGTTAGGTTTAACTCCCCACATGTCAAATTGTAAAATACCTTTACTTGC 182063 Query 62615 GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTC 62674 || || | || || ||||| ||||| || || || |||| || |||||| ||||| Sbjct 182064 AGGAGAACCCAAGTAGGTTTCATAAGGTCCATCTTTTTCTGCTAATTCACAACTAGCCTC 182123 Query 62675 TAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCT 62734 ||| ||| ||||||| || | |||||| |||| |||| || || || ||| Sbjct 182124 TAAGGCAGCGTAATAGATAGATTCAAAAATCTCAACGTTTA-ATTTTCTGGCTCCCTCAG 182182 Query 62735 A-TCAAATGGATAATTTAAG-AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCG 62792 | || |||| || ||| | || || || || | ||||||||||||||| || Sbjct 182183 ACTCGTATGGC-AAGCGAAGCATCATGAAACAATCTGCAAGTCCTTGAACACCAATTCCT 182241 Query 62793 ATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCT 62852 | ||||| |||| | || || ||| ||| ||| | | ||| || |||||| Sbjct 182242 AAAGGTCGATGTTTTAGGTTGGAACTTTTGCTTTCAGGAGTTGAATAGTAGCCAATATCA 182301 Query 62853 ATAATTTTATTGAGATTTCTG---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAA 62909 ||||| ||||| | ||||| |||| ||||| || ||||| || ||| |||| Sbjct 182302 ATAATCTTATTCAAGTTTCTAGTTACAAC--CTTTGTT-ACTTCCTTGAGCTTGTCAAAA 182358 Query 62910 TCAAA-----TCGCCCATCTATTA-CAAACATGTTCAATGCAACAGATGCCAGATTACAC 62963 ||||| | | | ||| | ||||| || | | ||| ||||||| || || Sbjct 182359 TCAAAAGTTTTTTTCTCTTTATCAACAAACTTGGGAAGTCCAATGGATGCCAAGTTGCAG 182418 Query 62964 ACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTG 63023 || || | ||||| || | ||| | ||| ||||| || || || |||||| | Sbjct 182419 ACAGCAATTTCATTTGCGCTAGTATACTCTATAATCTCTGTACAGAGGTTACTAGAAACA 182478 Query 63024 ATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAAT 63083 || || |||||||||| |||||||| |||| ||| || ||||| || ||| | Sbjct 182479 ATGGTGCCTAAATTTTTCTGATTACTTTTTTGATTAGCGGCGTCCTTGTAGCAAATATAG 182538 Query 63084 GGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTAT 63142 ||||| || ||||| || |||| || | || ||| | | || | ||||| || Sbjct 182539 GGAGTCCCCGTTTCTATTTGAGCTTGGAGTATAAGGAACCAAA-GCTTCTGTGCCTTCAT 182597 Query 63143 TATAGAT-TTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTC 63201 | | | || | |||| || |||| || ||| ||| | || ||||| | Sbjct 182598 TGTCTTTCTTCCACGGCCTTGCT-TTTCATAATCTTCATATAATTTTCTAAAATCGTCAC 182656 Query 63202 CCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 63261 ||||||||| | | || | | |||||||| || ||||| | | ||| ||| |||| Sbjct 182657 CCCAAACATCTTGAAGTCCACGGCATTCATCAGGGCACATAAGGGTCCAGTCTTGATCAT 182716 Query 63262 CCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTC 63321 | |||| || |||||| | ||| |||| ||| ||||| || ||||| | || Sbjct 182717 TTTCAACTCTTTCCATAAATAAATCGGGAACCCATAGAGCAGGGAAAAGATCACGGCATC 182776 Query 63322 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 63381 | ||| || || || ||| ||| | | || | ||| | | || |||| ||||| Sbjct 182777 TCATTTCTTCCTTGCCATGATTTTTTCTGATTTCTATGAATTCAACAACATCAACATGCC 182836 Query 63382 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC---TGATCTATGT 63438 | || ||||||||||| || || |||| | | | ||||| || || || || | Sbjct 182837 AAGGCTCCAAGTATATTGCAATCGCTCC---CTTTCTCTTTCCCCCACCTTGGTCGATAT 182893 Query 63439 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGG 63498 |||| || || | ||||||||| | | ||||||||| | ||| ||||| | ||||| | Sbjct 182894 ATCTTGCAGTATCATTATAAACACGTAGCATTGGAATCAAACCATTTGACCTTCCATTAG 182953 Query 63499 TACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTG 63558 |||| ||||| ||| | ||||||||||||| | | | ||||| || || | Sbjct 182954 TACCTCTTATATAAGATCCTGTACCACGAATATTACTCACCGCAATACCTAGCCCACCAG 183013 Query 63559 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCAT 63618 || |||| || |||||| | | || || ||| |||| || | ||| || | Sbjct 183014 CCGTTTTGCTAATATTTGCGCACTTTGTCAAAGTATCAAAGATTCCATTTATCGAGTCCT 183073 Query 63619 CGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATA 63678 | || |||||| ||||| ||||| || |||||| ||| || |||||||||| Sbjct 183074 CCGCAATCCTAAGTAAGAAACAAGAGGACATCTGTGGACGAGGAGTACCTGCATTAAATA 183133 Query 63679 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTG 63738 | || || | || || ||||| | || | || || || | || |||||||| || | Sbjct 183134 AAGTCGGCGTGGCATGAGTAAAATACTTCTGTGATAGCAGTTCATAAGTCTCAATTGCCG 183193 Query 63739 AGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 63798 | |||| ||| | ||| ||||| || || | ||||| || |||||| ||||| | Sbjct 183194 AATCTAAATCACCGCAATGTATTCCGCAAGCAACTCTCATTAGCAAGTGCTGTGGTCTCT 183253 Query 63799 CAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAAT 63858 |||| || |||| | | | |||| || |||||| | || | |||||| || |||||| Sbjct 183254 CAACTATCTTGTCATCCACTCTCAATAAATAGGATCTCTCAAGAGTTTTGAATGCAAAAT 183313 Query 63859 AGTTGTATGAAAAGTCTC 63876 ||| ||| |||||||| Sbjct 183314 AGTCGTACTCAAAGTCTC 183331 >seq141 Length=88262 Score = 221 bits (244), Expect = 2e-52 Identities = 583/864 (67%), Gaps = 36/864 (4%) Strand=Plus/Plus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 |||||| ||| |||| |||||||| || | |||||| |||||||||||||| |||| Sbjct 19847 CATAACACCCGCCATTTGATATTCACCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTG 19906 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCC 33397 | || || ||||| ||||||| ||||| ||||||||||| | ||||| |||| Sbjct 19907 AAGAGAAATCAAATCCATCCAATCAAAAGGATTAGTAACATTGTATA-TTTTTGAAATAT 19965 Query 33398 CAA-TTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33456 ||| || | |||||||| || || ||||| |||||| | |||| | | | ||| Sbjct 19966 CAAGAGCAACTAATAATCTATCAGCTACAAATTCAATATATTGTGTCATAAGTCTAGAAT 20025 Query 33457 TCATTCCTATGAGTTTAACTGG--AAGAGCCACAGTAAGAAATTCTTGTTCAATGGATAC 33514 |||| || || || | || || |||| |||| ||| ||| | | ||||| || Sbjct 20026 TCATACCAATAAGATCTACAGGTAAAGAATCACA-TAA-AAAGTTTCTTTCAACATCAAC 20083 Query 33515 CGCATTTGTTATAATAAATCTAACGGTTTCT-TCACTCGGTGGATGTAA---TAAATG-T 33569 || | || |||||| | || ||| | | ||| || ||| ||| || | Sbjct 20084 AGCTTCTGATATAATTTGTTGTAC----TCTAGAAATTGGT-AATTTAAATTTAAGTGAT 20138 Query 33570 TTAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTT 33628 ||| | || ||||| || ||||| ||| || | ||| || || | |||||||||||| || Sbjct 20139 TTATAAATTAAACAAGCAAAATCTGCA-TGTAAACCTTCATCACGACTAATTAATTCATT 20197 Query 33629 AGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGA 33688 |||||| || || || ||||||| ||||| ||||| | ||||||||| | | ||| Sbjct 20198 AGAAAATGTAAGACCAGGCATTAATCCACGTTTTTTTAACCAAAATATAGCACAGAAACT 20257 Query 33689 TCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 33748 || ||||| || || ||||| |||||| || |||| | ||| || || || | Sbjct 20258 ACCAGAAAATAAAATACCTTCAACTGCACAGAATCCAATTAATCTTTCAGCA-AATGAAC 20316 Query 33749 GCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC----ACAAGGCATC 33803 | | | || ||||| ||| ||||| || || || ||||| || ||| ||| Sbjct 20317 GATCATTATTCATCCATTTTGTTGCCCATTCTGCTTTTTTTTTAACTGCATCAA--CATG 20374 Query 33804 GTTTCTATGGCATTAAAGAGATAGtt-tttttCATTACTATCTTTAACATAAGTATCGAT 33862 | ||| || | ||| | | | || ||| ||| |||| | | ||| ||| || Sbjct 20375 AGT--TATAGCTTCAAATA-ACATTTGACGTTCCTTAATATCACTTATATATTGATCTAT 20431 Query 33863 CA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 33920 | || || ||| |||| || || | |||||| ||||| |||||| | || | | Sbjct 20432 AAGTAATGA--ATAAGTTTCATTGTGTATTTGTTCAATAGCCATTTGAAATGCATA-ATA 20488 Query 33921 CA-TCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCAC 33979 || ||| || || ||||| || | |||| | |||| | | || | |||||| | || Sbjct 20489 CATTCTTGCTTCAGTAATTTGTATTTCTCTTAAAAAATTTACAGCAAGATTTTCCATAAC 20548 Query 33980 TATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGG 34039 ||||||||||| || |||||||| || | |||| ||| ||||||| |||||| Sbjct 20549 AATTCCATCACTTGCAGCAAAAAATGCAAGAACATATTTAATAAAATGTTTTTCAGGATC 20608 Query 34040 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 34099 | ||| | |||||| | || |||| | || ||| | |||||| || |||||| Sbjct 20609 TTTTAAACTTCCCCAATCTCTCATGTCTTGACTTAAATCAATTTCTTCAGCTACCCAAAA 20668 Query 34100 TGATGCCTCTGCCTTTTTATACAT 34123 || || || || ||||| ||||| Sbjct 20669 AGAAGCTTCAGCTTTTTTGTACAT 20692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816458455600