Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq129 365 4e-96 seq141 295 6e-75 >seq129 Length=387383 Score = 365 bits (404), Expect = 4e-96 Identities = 1209/1854 (65%), Gaps = 56/1854 (3%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || ||||||| ||||| | | || || |||||| | ||||| || || || Sbjct 181483 TCTACAGTGAATTGAATAGGCCTAGTGGCACTTTGTGTTCTTAAGTAATATATCCCCGTC 181542 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || || | |||| || |||||||||||| | || || || | | | ||| Sbjct 181543 TTAAGACCTTTTTTCCAGCCATAAAAATGCATAGAAGAAAGCTTCGCAAAATTCGCATTT 181602 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 || |||| ||| ||| |||||| || ||| | | ||||| || |||||||| Sbjct 181603 TCCATATGTATATTCAGAGATTGAGACTGGCAAATATAAGGTCCTCTATCTGCTGCCATG 181662 Query 36970 TCTAAAATAC--ATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027 || || ||| | ||||| || |||||||| |||||||||| | | ||||| | Sbjct 181663 TC--AATTACTGACTTTTGTTTGATTTCCCAAACTGTTTTATATAAATTTCGTATATCTT 181720 Query 37028 CTGGTA---AATCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGT 37084 |||| | |||||| || ||||||| || || | || || ||| |||||| | || Sbjct 181721 CTGGAATACAATCTATATTTTGAATACTGCCGTTGT-TAGCA--ATTATATTCTGTTTGA 181777 Query 37085 CA---TTATTCCACATATTTCTACTT--ATTAGTTCTCTCAATAGGTGTGGATTTACAAC 37139 | | |||||| || | ||| | | | || ||| || |||||||| || | Sbjct 181778 GACGATCATTCCA--TAATCCTAGCTCGAGCAAGTCATTCAGGAGATGTGGATTCACGA- 181834 Query 37140 CTGAAAATCTC--CAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||| ||| | |||| ||||| | ||| ||||| ||| | || || | Sbjct 181835 -TGAAAAACTCGCCGGATAGAACTCTACGATGATAAATATTTGACGTAAAAGGCTCGAAA 181893 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 |||||||| | ||||| ||||| |||||||| || ||||| ||||| | || | | Sbjct 181894 CTTTCATTATTTCCCAATATCTGAGAGGTAGATGCTGTGGGCATAGGTGCCAATAATAAG 181953 Query 37258 CTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCT 37317 |||||| | |||||| | || | | ||| ||| | |||||| || | || Sbjct 181954 GAATTTCTTAGTCCATGCTTGGAGATCTTTTGTTTAAGTAGGTCCCAATCGCAAATTCCT 182013 Query 37318 G--TTGGGTTCTTTAAC----CACATATCATATTGTAGAATACCTTTACTCGCTGGAGAA 37371 | || |||| |||| ||||| ||| |||||| |||||||||||| || |||||| Sbjct 182014 GAGTTAGGTT---TAACTCCCCACATGTCAAATTGTAAAATACCTTTACTTGCAGGAGAA 182070 Query 37372 TCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCG 37431 | || || ||||||||||| | ||| |||| ||| ||||||| |||| || Sbjct 182071 CCCAAGTAGGTTTCATAAGGTCCATCTTTTTCTGCTAATTCACAACTAGCCTCTAAGGCA 182130 Query 37432 GCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAAT 37491 || ||||| || | ||| ||||| | | |||||| || | ||| | || ||| || Sbjct 182131 GCGTAATAGATAGATTCAAAAATCTCAACGTTTAATTTTCTGGCTCCCTCAGACTCGTAT 182190 Query 37492 GCATAGCCCAATAATAT-AAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCT 37550 | ||| | | || ||||| ||| || | || |||||||| || |||| |||| Sbjct 182191 GGCAAGCGAAGCATCATGAAACA-ATCTGCAAGTCCTTGAACACCAATTCCTAAAGGTCG 182249 Query 37551 ATGTTTCTTATTAGATCTAGACGATTCTATCA----CTGGATAATAATTGATATCTATTA 37606 |||||| || || || | || ||| || ||| || ||||| || | Sbjct 182250 ATGTTTTAGGTTGGAACT----TTTGCTTTCAGGAGTTGAATAGTAGCCAATATCAATAA 182305 Query 37607 TTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CATAAA 37664 | ||||| | ||| || || | || || | | | | |||||| || || || Sbjct 182306 TCTTATTCAAGTTTCTAGTTACAACCTTTGTTACTTCCTTGAGCTTGTCAAAATCAAAAG 182365 Query 37665 TACGTT----ATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAA 37720 | || |||| |||||| || | ||| ||| | | || || ||||||| Sbjct 182366 TTTTTTTCTCTTTATCAACAAACTTGGGAAGTCCAATGGATGCCAAGTTGCAGACAGCAA 182425 Query 37721 CTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTC 37780 ||||| | || || || | | |||||||||||||||||| ||||| || ||| || | Sbjct 182426 TTTCATTTGCGCTAGTATACTCTATAATCTCTGTACAGAGGTTACTAGAAACAATGGTGC 182485 Query 37781 CCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTC 37840 | ||||| | ||||| ||||| |||| | || || || ||||| || || | Sbjct 182486 CTAAATTTTTCTGATTACTTTTTTGATTAGCGGCGTCCTTGTAGCAAATATAGGGAGTCC 182545 Query 37841 CTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT-TGCTTTAACGATCGCT 37899 | |||||||||||| | || ||| ||| || ||||| ||| || | | || Sbjct 182546 CCGTTTCTATTTGAGCTTGGAGTATAAGGAACCA-AAGCTTCTGTGCCTT--CATTGTCT 182602 Query 37900 TTAAtttttttCTTTG--TTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATA 37957 || | | ||| |||| || ||| ||||||||| ||||||| | ||||| | Sbjct 182603 TTCTTCCACGGCCTTGCTTTTCATAATCTTCATATAATTTTCTAAAATCGTCACCCCAAA 182662 Query 37958 CATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTA 38017 |||| | ||| | ||||| || ||||| || | ||| |||| ||| ||||| | Sbjct 182663 CATCTTGAAGTCCACGGCATTCATCAGGGCACATAAGGGTCCAGTCTTGATCATTTTCAA 182722 Query 38018 CGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATT 38077 | | ||||||||||||||| || ||||||| |||| || | ||| | ||| || Sbjct 182723 CTCTTTCCATAAATAAATCGGGAACCCATAGAGCAGGGAAAAGATCACGGCATCTCATTT 182782 Query 38078 CTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTT 38137 |||| || || ||| ||||| | || || || | | |||| | ||||| || | Sbjct 182783 CTTCCTTGCCATGATTTTTTCTGATTTCTATGAATTCAACAACATCAACATGCCAAGGCT 182842 Query 38138 CTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTG 38197 | | || || | || ||||| ||| || | || || || | |||||||| | | Sbjct 182843 CCAAGTATATTGCAATCGCTCCCTTTCTCTTTCCCCCACCTTGGTCGATATATCTTGCAG 182902 Query 38198 TGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATA 38257 | | |||||| | | || ||| || | | |||||| || | || || |||| || Sbjct 182903 TATCATTATAAACACGTAGCATTGGAATCAAACCATTTGACCTTCCATTAGTACCTCTTA 182962 Query 38258 TATAAGTACCCTTAGCTCGTATATTACTTATCGACAAT-CCTATTCCACCTGCATGTTTT 38316 |||||| || || | || |||||||| | || |||| |||| ||||| || ||||| Sbjct 182963 TATAAGATCCTGTACCACGAATATTACTCACCG-CAATACCTAGCCCACCAGC-CGTTTT 183020 Query 38317 GATATTA-AAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTAT 38375 | || || ||||| | | | || |||||||| || || | ||| ||| ||| || Sbjct 183021 GCTAATATTTGCGCACTTTGTCAAAGTATCAAAGATTCCATTTATCGAGTCCTCCGCAAT 183080 Query 38376 TGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGG 38435 |||| |||||| ||||| || || ||||| || || |||||||| || || Sbjct 183081 CCTAAGTAAGAAACAAGAGGACATCTGTGGACGAGGAGTACCTGCATTAAATAAAGTCGG 183140 Query 38436 AGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTAT 38495 | ||||| | || | || | || | | ||| || || ||| | ||||| Sbjct 183141 CGTGGCATGAGTAAAATACTTCTGTGATAGCAGTTCATAAGTCTCAATTGCCGAATCTAA 183200 Query 38496 ATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTAT 38555 |||||||| || || || || || |||||||||| || |||||||| || | ||| Sbjct 183201 ATCACCGCAATGTATTCCGCAAGCAACTCTCATTAGCAAGTGCTGTGGTCTCTCAACTAT 183260 Query 38556 TTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATA 38609 || | || | | | | || ||| ||| | || | ||||| | | ||||||| Sbjct 183261 CTTGTCATCCACTCTCAATAAATAGGATCTCTCAAGAGTTTTGAATGCAAAATA 183314 >seq141 Length=88262 Score = 295 bits (326), Expect = 6e-75 Identities = 605/876 (69%), Gaps = 40/876 (5%) Strand=Plus/Plus Query 11327 AACACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCT 11386 ||||||| | | |||||||||||| ||||| | ||| ||||||||||| ||||||| Sbjct 19850 AACACCCGC--CATTTGATATTCACCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTGA 19907 Query 11387 AGTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCT 11446 || || || | ||||| | |||||||||| |||||| | | |||| | | | Sbjct 19908 AGAGAAATCAAATCCATCCAATCAAAAGGATTAGTAACATTGTATATTTTTGAAATATCA 19967 Query 11447 AACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTC 11506 | | |||||||||||| || || ||||| ||||| || | ||| | | | ||||| Sbjct 19968 AGAGCAACTAATAATCTATCAGCTACAAATTCAATATATTGTGTCATAAGTCTAGAATTC 20027 Query 11507 ATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCA 11566 ||||| |||||||| || || | || | | ||||| | |||| | || ||| || Sbjct 20028 ATACCAATAAGATCTACAGGTAAAGAATCACATAAAAAGTTTCTTTCAACATCAACAGCT 20087 Query 11567 TCAATGATTATCGACGTTATAACTTCCTTAGATGGTGG--ATGTAA---TAAATG-TTTA 11620 || || || ||| || || |||| ||| || ||| ||| || |||| Sbjct 20088 TCTGATATAATTT--GTTGTAC--TC--TAGAAATTGGTAATTTAAATTTAAGTGATTTA 20141 Query 11621 AACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAA 11680 | |||||||| |||||||| |||||||||||| || | ||| |||| |||||||||| Sbjct 20142 TAAATTAAACAAGCAAAATCTGCATGTAAACCTTCATCACGACTAATTAATTCATTAGAA 20201 Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA 11740 ||||| | || ||||| ||||| |||||||||| ||||||||||||| || |||| Sbjct 20202 AATGTAAGACCAGGCATTAATCCACGTTTTTTTAACCAAAATATAGCACAGAAACTACCA 20261 Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATAT--ACCTTGT 11798 ||||| || || || || || || ||| | | || |||||| || || || | Sbjct 20262 GAAAATAAAATACCTTCAACTGCACAGAATCCAATTAATCTTTCAGCAAATGAACGATCA 20321 Query 11799 TGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTAC-GCATTCCATTGTTTCT 11857 | || ||||||||| | ||||| || ||||| ||||| || |||| || | | Sbjct 20322 T--TATTCATCCATTTTGTTGCCCATTCTGCTTTTTTTTTAACTGCATCAACATGAGT-T 20378 Query 11858 ATAGCGTTAAATAAATGCATTT---TTTCTATATTATCTCTTACATATGTATCTATTAAT 11914 ||||| | |||||| ||||| ||| || |||| |||| |||| |||||| | | Sbjct 20379 ATAGCTTCAAATAA---CATTTGACGTTCCTTAATATCACTTATATATTGATCTATAAGT 20435 Query 11915 AAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACA-TCG 11973 || ||| |||| || || | ||| ||||| ||||||||| |||| | ||| || Sbjct 20436 AATGAATAAGTTTCATTGTGTATTTGTTCAATAGCCATTTGAAATGCATA-ATACATTCT 20494 Query 11974 TGCCTCTGAACACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATAC 12032 ||| || | | |||| || | | ||||| || | || | ||| || | ||||| | Sbjct 20495 TGCTTCAGTAATTTGTATTTCTCTTAAAAAAT-TTACAGCAAGATTTTCCATAACAATTC 20553 Query 12033 CATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTC---GTCTTTAG 12089 ||||||| | ||||||||||| || | || ||| ||||| | |||||| |||| Sbjct 20554 CATCACTTGCAGCAAAAAATGCAAGAACATATTTAATAAAATGTTTTTCAGGATCTT--- 20610 Query 12090 TTAATTTATCCCAATCATCTAAATCTTTTGA--TAAATCTACTTCTTCAACGGTCCAAAA 12147 |||| | ||||||| ||| || | |||| |||||| | ||||||| | |||||| Sbjct 20611 TTAAACTTCCCCAATC-TCT-CATGTCTTGACTTAAATCAATTTCTTCAGCTACCCAAAA 20668 Query 12148 ACTTGCCACTGATTGTTTATACATTTTCCAGATATC 12183 | || | | || ||| |||||| ||| || || Sbjct 20669 AGAAGCTTCAGCTTTTTTGTACATTGACCAAATTTC 20704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468523950798800