Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq129 430 2e-115 seq141 248 1e-60 >seq129 Length=387383 Score = 430 bits (476), Expect = 2e-115 Identities = 1196/1818 (66%), Gaps = 40/1818 (2%) Strand=Plus/Plus Query 64878 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG 64937 || || || ||||| || ||||| |||| || |||||||||||| | || || Sbjct 181528 TAATATATCCCCGTCTTAAGACCTTTTTTCCAGCCATAAAAATGCATAGAAGAAAGCTTC 181587 Query 64938 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 64997 | | || ||| || | | ||||| ||||||| ||||||| || || | | ||| Sbjct 181588 GCAAAATTCGCATTTTCCATATGTATATTCAGAGATTGAGACTGGCAAATATAAGGTCCT 181647 Query 64998 CTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AAC 65056 || ||||| ||||| | || | | ||||||| |||||||||| |||||||| || Sbjct 181648 CTATCTGCTGCCATGTCAATTACTGACTTTTGTTTGATTTCCCAAACTGTTTTATATAAA 181707 Query 65057 TCGCTTAATATCTTCTGGAAGG---TTTGTATTCTGAATGGATCCACCATCTGCCATAAT 65113 | | || |||||||||||| | | |||| ||||| || | || || || Sbjct 181708 TTTCGTA-TATCTTCTGGAATACAATCTATATTTTGAATACTGCCGTTGTTAGCAATTAT 181766 Query 65114 CCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGG 65173 | | |||| ||||||||||||| | |||| || | | |||||||| || Sbjct 181767 ATTCTGTTTGAGACGATCATTCCATAATCCTAGCTCGAGCAAGTCATTCAGGAGATGTGG 181826 Query 65174 ATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGG 65233 ||| || | ||| || || || | ||||| ||| |||||||| ||| | || Sbjct 181827 ATTCACGATGAAAAACTCGCCGGATAGAACTCTACGATGATAAATATTTGACGTAAAAGG 181886 Query 65234 TTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 65293 || | | |||||||||||||| || |||| || ||||| || ||||||||||||| Sbjct 181887 CTCGAAACTTTCATTATTTCCCAATATCTGAGAGGTAGATGCTGTGGGCATAGGTGCCAA 181946 Query 65294 CAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCA 65353 ||||| |||||| || || | | ||| || | ||| || | ||||||| || Sbjct 181947 TAATAAGGAATTTCTTAGTCCATGCTTGGAGATCTTTTGTTTAAGTAGGTCCCAATCGCA 182006 Query 65354 AAGATCCGAC---GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTA 65410 || | || ||| ||| ||||| |||||| ||||| || Sbjct 182007 AATTCCTGAGTTAGGTTTAACTCCCCACATGTCAAATTGTAAAATACCTTTACTTGCAGG 182066 Query 65411 CGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAA 65470 || || | || || || || ||||| || || || |||| ||||||||| |||||||| Sbjct 182067 AGAACCCAAGTAGGTTTCATAAGGTCCATCTTTTTCTGCTAATTCACAACTAGCCTCTAA 182126 Query 65471 TGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCC---AGGCT 65527 ||| ||||||| || | ||| || |||| |||| || || || ||| || || Sbjct 182127 GGCAGCGTAATAGATAGATTCAAAAATCTCAACGTTTA-ATTTTCTGGCTCCCTCAGACT 182185 Query 65528 ATCAAATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGA 65586 | |||| || ||| | || || ||||| | ||||||||||||||| || | Sbjct 182186 --CGTATGGC-AAGCGAAGCATCATGAAACAATCTGCAAGTCCTTGAACACCAATTCCTA 182242 Query 65587 TAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTA 65646 ||||| |||| | || || ||| ||| ||| | | ||| || |||||| | Sbjct 182243 AAGGTCGATGTTTTAGGTTGGAACTTTTGCTTTCAGGAGTTGAATAGTAGCCAATATCAA 182302 Query 65647 TAATTTTATTGAGATTTCTG---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAAT 65703 |||| ||||| | ||||| |||| ||||| || ||||| || ||| ||||| Sbjct 182303 TAATCTTATTCAAGTTTCTAGTTACAAC--CTTTGTT-ACTTCCTTGAGCTTGTCAAAAT 182359 Query 65704 CAAA------TCGCTCATCTATTA-CAAACATGTTCAATGCAACAGATGCCAGATTACAA 65756 |||| | ||| | ||| | ||||| || | | ||| ||||||| || || Sbjct 182360 CAAAAGTTTTTTTCTCTT-TATCAACAAACTTGGGAAGTCCAATGGATGCCAAGTTGCAG 182418 Query 65757 ACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTG 65816 || || | ||||| || | ||| | ||| ||||| || || || |||||| | Sbjct 182419 ACAGCAATTTCATTTGCGCTAGTATACTCTATAATCTCTGTACAGAGGTTACTAGAAACA 182478 Query 65817 ATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAAT 65876 ||||| |||||||||| |||||||| |||| ||| || ||||| || ||| | Sbjct 182479 ATGGTGCCTAAATTTTTCTGATTACTTTTTTGATTAGCGGCGTCCTTGTAGCAAATATAG 182538 Query 65877 GGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTAT 65935 ||||| || ||||| || |||| || | || ||| | | || | ||||| || Sbjct 182539 GGAGTCCCCGTTTCTATTTGAGCTTGGAGTATAAGGAACCAAA-GCTTCTGTGCCTTCAT 182597 Query 65936 TATAGAT-TTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTC 65994 | | | || | | || || |||| || | ||| ||| | || ||||| | Sbjct 182598 TGTCTTTCTTCCACGGCCTTGCT-TTTCATAATCTTCATATAATTTTCTAAAATCGTCAC 182656 Query 65995 CCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCAT 66054 ||||||||| | | |||| | |||||||| || ||||| | | ||| ||| |||| Sbjct 182657 CCCAAACATCTTGAAGTCCACGGCATTCATCAGGGCACATAAGGGTCCAGTCTTGATCAT 182716 Query 66055 CCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTC 66114 | |||| || |||||| | ||| |||| ||| ||||| || | ||| | | || Sbjct 182717 TTTCAACTCTTTCCATAAATAAATCGGGAACCCATAGAGCAGGGAAAAGATCACGGCATC 182776 Query 66115 TATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCC 66174 | ||| || || || ||| ||| | | || | ||| | | || |||| ||||| Sbjct 182777 TCATTTCTTCCTTGCCATGATTTTTTCTGATTTCTATGAATTCAACAACATCAACATGCC 182836 Query 66175 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC---TGATCTATGT 66231 | || ||||||||||| || || |||| | | | ||||| || || || || | Sbjct 182837 AAGGCTCCAAGTATATTGCAATCGCTCC---CTTTCTCTTTCCCCCACCTTGGTCGATAT 182893 Query 66232 ATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGG 66291 |||| || || | ||||||||| | | ||||||||| | |||||| || | ||||| | Sbjct 182894 ATCTTGCAGTATCATTATAAACACGTAGCATTGGAATCAAACCATTTGACCTTCCATTAG 182953 Query 66292 TCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTG 66351 | || ||||| ||| | ||||||||||||| | | | ||||| || || | Sbjct 182954 TACCTCTTATATAAGATCCTGTACCACGAATATTACTCACCGCAATACCTAGCCCACCAG 183013 Query 66352 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCAT 66411 || |||| || |||||| | | || |||||| |||| || | ||| || | Sbjct 183014 CCGTTTTGCTAATATTTGCGCACTTTGTCAAAGTATCAAAGATTCCATTTATCGAGTCCT 183073 Query 66412 CCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA 66471 || || |||||| ||||| ||||| || ||||| ||| || |||||||||| Sbjct 183074 CCGCAATCCTAAGTAAGAAACAAGAGGACATCTGTGGACGAGGAGTACCTGCATTAAATA 183133 Query 66472 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTG 66531 | || || | || || ||||| | || | || || || | || |||||||| || | Sbjct 183134 AAGTCGGCGTGGCATGAGTAAAATACTTCTGTGATAGCAGTTCATAAGTCTCAATTGCCG 183193 Query 66532 AGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 66591 | |||| ||| | ||| ||||| || || | ||||| || |||||| ||||| | Sbjct 183194 AATCTAAATCACCGCAATGTATTCCGCAAGCAACTCTCATTAGCAAGTGCTGTGGTCTCT 183253 Query 66592 CAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAAT 66651 |||| ||||||| | | | |||| || |||||| | || | |||||| || |||||| Sbjct 183254 CAACTATCTTGTCATCCACTCTCAATAAATAGGATCTCTCAAGAGTTTTGAATGCAAAAT 183313 Query 66652 AGTTGTATGAAAAGTCTC 66669 ||| ||| |||||||| Sbjct 183314 AGTCGTACTCAAAGTCTC 183331 >seq141 Length=88262 Score = 248 bits (274), Expect = 1e-60 Identities = 590/864 (68%), Gaps = 36/864 (4%) Strand=Plus/Plus Query 35854 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 35913 |||||| ||| |||| |||||||| || | |||||| ||||||||||||||||||| Sbjct 19847 CATAACACCCGCCATTTGATATTCACCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTG 19906 Query 35914 TAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCC 35973 | || || ||||| |||| || ||||| ||||||| || | ||||| |||| Sbjct 19907 AAGAGAAATCAAATCCATCCAATCAAAAGGATTAGTAACATTGTATA-TTTTTGAAATAT 19965 Query 35974 CAA-TTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 36032 ||| || | |||||||| || |||||||| |||||| | |||| | | | ||| Sbjct 19966 CAAGAGCAACTAATAATCTATCAGCTACAAATTCAATATATTGTGTCATAAGTCTAGAAT 20025 Query 36033 TCATTCCTATAAGTTTAACTGG--AAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 36090 |||| || ||||| | || || |||| |||| ||| ||| | | ||||| | || Sbjct 20026 TCATACCAATAAGATCTACAGGTAAAGAATCACA-TAA-AAAGTTTCTTTCAACATCAAC 20083 Query 36091 CGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAA--TAAATG-TTT 36147 || |||| |||||| | |||| | | | ||| | || ||| || ||| Sbjct 20084 AGCTTCTGATATAATTTGTTGTACTCT---AGAAATTGGTAATTTAAATTTAAGTGATTT 20140 Query 36148 AAACATCAAACATGCGAAATC-GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 36206 | | || ||||| || ||||| ||| |||| ||| || || | |||||||||||| || | Sbjct 20141 ATAAATTAAACAAGCAAAATCTGCA-TGTAAACCTTCATCACGACTAATTAATTCATTAG 20199 Query 36207 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT-GGACGCAAATGAT 36265 |||| || || || ||||||| ||||| ||||| | ||||||||| | || ||| | Sbjct 20200 AAAATGTAAGACCAGGCATTAATCCACGTTTTTTTAACCAAAATATAGCACAGAAACTA- 20258 Query 36266 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAACCGG 36323 |||||||| ||||| ||||| ||||| || |||| | ||| || | || | || Sbjct 20259 CCAGAAAATAAAATACCTTCAACTGCACAGAATCCAATTAATCTTTCAGCAAATGAACG- 20317 Query 36324 CACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC----ACAAGGCATT 36379 | | || ||||| ||| ||||| || || || ||||| || ||| || | Sbjct 20318 -ATCATTATTCATCCATTTTGTTGCCCATTCTGCTTTTTTTTTAACTGCATCAA--CA-T 20373 Query 36380 GTCTCTATAGCATTAAAGAGATAGtt-tttttCATTACTATCTTTAACATATGTATCAAT 36438 | | |||||| | ||| | | | || ||| ||| |||| | | |||| ||| || Sbjct 20374 GAGT-TATAGCTTCAAATA-ACATTTGACGTTCCTTAATATCACTTATATATTGATCTAT 20431 Query 36439 CA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 36496 | || || ||| |||| || || | |||||| |||||||||||| | || | | Sbjct 20432 AAGTAATGA--ATAAGTTTCATTGTGTATTTGTTCAATAGCCATTTGAAATGCATA-ATA 20488 Query 36497 CA-TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCAC 36555 || ||| || || ||||| |||| |||| | |||| | | || | |||||| | || Sbjct 20489 CATTCTTGCTTCAGTAATTTGTATTTCTCTTAAAAAATTTACAGCAAGATTTTCCATAAC 20548 Query 36556 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGG 36615 ||||| ||||| || |||||||| || | |||| ||| ||||||| |||||| Sbjct 20549 AATTCCATCACTTGCAGCAAAAAATGCAAGAACATATTTAATAAAATGTTTTTCAGGATC 20608 Query 36616 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 36675 | ||| | |||||| | || |||| | || ||| | |||||| || |||||| Sbjct 20609 TTTTAAACTTCCCCAATCTCTCATGTCTTGACTTAAATCAATTTCTTCAGCTACCCAAAA 20668 Query 36676 TGATGCCTCTGCCTTTTTATACAT 36699 || || || || ||||| ||||| Sbjct 20669 AGAAGCTTCAGCTTTTTTGTACAT 20692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658171607061800