Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq129 475 5e-129 seq141 212 9e-50 >seq129 Length=387383 Score = 475 bits (526), Expect = 5e-129 Identities = 1204/1813 (66%), Gaps = 30/1813 (2%) Strand=Plus/Plus Query 78757 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTG 78816 || || || ||||| || ||||| |||| || || ||||||||| | || || Sbjct 181528 TAATATATCCCCGTCTTAAGACCTTTTTTCCAGCCATAAAAATGCATAGAAGAAAGCTTC 181587 Query 78817 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 78876 | | || ||| || | | ||||| ||||||| ||||||| || || | | ||| Sbjct 181588 GCAAAATTCGCATTTTCCATATGTATATTCAGAGATTGAGACTGGCAAATATAAGGTCCT 181647 Query 78877 CTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AAC 78935 || ||||| ||||| | || | | ||||||| |||||||||| |||||||| || Sbjct 181648 CTATCTGCTGCCATGTCAATTACTGACTTTTGTTTGATTTCCCAAACTGTTTTATATAAA 181707 Query 78936 TCGCTTAATATCTTCTGGAAGG---TTTGTATTCTGAATGGATCCACCATCTGCCATAAT 78992 | | || |||||||||||| | | |||| ||||| || | || || || Sbjct 181708 TTTCGTA-TATCTTCTGGAATACAATCTATATTTTGAATACTGCCGTTGTTAGCAATTAT 181766 Query 78993 CCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGG 79052 | | |||| |||||||||||| | |||| || | | |||||||| || Sbjct 181767 ATTCTGTTTGAGACGATCATTCCATAATCCTAGCTCGAGCAAGTCATTCAGGAGATGTGG 181826 Query 79053 ATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGG 79112 ||| || | ||| || || || | ||||| ||| |||||||| ||| | || Sbjct 181827 ATTCACGATGAAAAACTCGCCGGATAGAACTCTACGATGATAAATATTTGACGTAAAAGG 181886 Query 79113 TTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCAC 79172 || | ||||||||||||||| || |||| || ||||| || ||||||||||||| Sbjct 181887 CTCGAAACTTTCATTATTTCCCAATATCTGAGAGGTAGATGCTGTGGGCATAGGTGCCAA 181946 Query 79173 CAATAAACTATTTCTAAGACCGTATGATCTGA--TTTTATCTTTTAGAGATTCCCAATCC 79230 ||||| |||||| || || ||| | || | || | ||| || |||||||| Sbjct 181947 TAATAAGGAATTTCTTAGTCC--ATGCTTGGAGATCTTTTGTTTAAGTAGGTCCCAATCG 182004 Query 79231 CAAAGATCAGAC---GGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCG 79287 |||| | || || ||| ||| | ||| |||||| |||||| ||||| || Sbjct 182005 CAAATTCCTGAGTTAGGTTTAACTCCCCACATGTCAAATTGTAAAATACCTTTACTTGCA 182064 Query 79288 TATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCT 79347 || || ||| |||||||||||||| || ||||| |||||||||||||| |||||| Sbjct 182065 GGAGAACCCAAGTAGGTTTCATAAGGTCCATCTTTTTCTGCTAATTCACAACTAGCCTCT 182124 Query 79348 AATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCT---AGG 79404 || || ||||||| || | ||| ||||||| || | || || || || || Sbjct 182125 AAGGCAGCGTAATAGATAGATTCAAAAATCTCAACGTTTA-ATTTTCTGGCTCCCTCAGA 182183 Query 79405 CTATCAAATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463 || | |||| || ||| | || || ||||| | ||||||||||||||| || Sbjct 182184 CT--CGTATGGC-AAGCGAAGCATCATGAAACAATCTGCAAGTCCTTGAACACCAATTCC 182240 Query 79464 GATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATC 79523 | ||||| |||| | || ||| ||| ||| ||| | | ||| || |||||| Sbjct 182241 TAAAGGTCGATGTTTTAGGTTGGAACTTTTGCTTTCAGGAGTTGAATAGTAGCCAATATC 182300 Query 79524 TATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATC 79583 ||||| ||||| | || || || || || || ||||| || ||| |||||| Sbjct 182301 AATAATCTTATTCAAGTTTCTAGTTACAACCTTTGTTACTTCCTTGAGCTTGTCAAAATC 182360 Query 79584 AAA-----TCGTCCATCTATTA-CAAACATGTTCAACGCGACAGATGCCAGATTACAAAC 79637 ||| | || | ||| | ||||| || | | | ||||||| || || || Sbjct 182361 AAAAGTTTTTTTCTCTTTATCAACAAACTTGGGAAGTCCAATGGATGCCAAGTTGCAGAC 182420 Query 79638 GGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAAT 79697 || | ||||| || | ||| | ||| || || || |||||||||||| | ||| Sbjct 182421 AGCAATTTCATTTGCGCTAGTATACTCTATAATCTCTGTACAGAGGTTACTAGAAACAAT 182480 Query 79698 GGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGG 79757 ||| |||||||||| |||||||| |||| ||| || ||||| || ||| | || Sbjct 182481 GGTGCCTAAATTTTTCTGATTACTTTTTTGATTAGCGGCGTCCTTGTAGCAAATATAGGG 182540 Query 79758 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTA 79816 ||| || ||||| || |||| || | || ||| | | || | ||||| ||| Sbjct 182541 AGTCCCCGTTTCTATTTGAGCTTGGAGTATAAGGAACCAAA-GCTTCTGTGCCTTCATTG 182599 Query 79817 TAGA-CTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCC 79875 | ||| | | || || |||| || | | ||||||| | || ||||| ||| Sbjct 182600 TCTTTCTTCCACGGCCTTGCT-TTTCATAATCTTCATATAATTTTCTAAAATCGTCACCC 182658 Query 79876 CAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCC 79935 |||||||| | | |||| | ||||| ||||| ||||| | | ||| ||| ||||| Sbjct 182659 CAAACATCTTGAAGTCCACGGCATTCATCAGGGCACATAAGGGTCCAGTCTTGATCATTT 182718 Query 79936 TTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTA 79995 | |||| || |||||| | ||| |||| ||| ||||| || ||||| | | ||| Sbjct 182719 TCAACTCTTTCCATAAATAAATCGGGAACCCATAGAGCAGGGAAAAGATCACGGCATCTC 182778 Query 79996 TGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 80055 || || || || ||| ||| | | || | ||| | | || |||| |||||| Sbjct 182779 ATTTCTTCCTTGCCATGATTTTTTCTGATTTCTATGAATTCAACAACATCAACATGCCAA 182838 Query 80056 GGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTA 80115 || ||||||||||| || || ||||| || || || || || || || ||||| Sbjct 182839 GGCTCCAAGTATATTGCAATCGCTCCCTTTCTCTTTCCCCCACCTTGGTCGATATATCTT 182898 Query 80116 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCG 80175 || || | ||||||||| | | ||||||||| | |||||| || | ||||| || || Sbjct 182899 GCAGTATCATTATAAACACGTAGCATTGGAATCAAACCATTTGACCTTCCATTAGTACCT 182958 Query 80176 GAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 80235 ||||| ||| | ||||||||||||| | | | ||||| || || ||| || Sbjct 182959 CTTATATAAGATCCTGTACCACGAATATTACTCACCGCAATACCTAGCCCACCAGCCGTT 183018 Query 80236 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATC 80295 || || |||||| | | || |||||| |||| || | ||| || || Sbjct 183019 TTGCTAATATTTGCGCACTTTGTCAAAGTATCAAAGATTCCATTTATCGAGTCCTCCGCA 183078 Query 80296 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 80355 || |||||| ||||| ||||| || ||||| ||| || ||||||||||| || Sbjct 183079 ATCCTAAGTAAGAAACAAGAGGACATCTGTGGACGAGGAGTACCTGCATTAAATAAAGTC 183138 Query 80356 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 80415 || | || || ||||| | || | || || || | || |||||||| || || ||| Sbjct 183139 GGCGTGGCATGAGTAAAATACTTCTGTGATAGCAGTTCATAAGTCTCAATTGCCGAATCT 183198 Query 80416 ATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 80475 | ||| | ||| ||||| || || | ||||| || |||||| ||||| ||||| Sbjct 183199 AAATCACCGCAATGTATTCCGCAAGCAACTCTCATTAGCAAGTGCTGTGGTCTCTCAACT 183258 Query 80476 ATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 80535 ||||||| || | | |||| || || ||| | || | |||||| || ||||||||| | Sbjct 183259 ATCTTGTCATCCACTCTCAATAAATAGGATCTCTCAAGAGTTTTGAATGCAAAATAGTCG 183318 Query 80536 TATGAAAAGTCTC 80548 || |||||||| Sbjct 183319 TACTCAAAGTCTC 183331 >seq141 Length=88262 Score = 212 bits (234), Expect = 9e-50 Identities = 587/868 (68%), Gaps = 44/868 (5%) Strand=Plus/Plus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 |||||| ||| |||| |||||||| || | |||||| |||||||||||||| |||| Sbjct 19847 CATAACACCCGCCATTTGATATTCACCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTG 19906 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 49775 | || || ||||| ||||||| ||||| |||||||| || | ||||| |||| Sbjct 19907 AAGAGAAATCAAATCCATCCAATCAAAAGGATTAGTAACATTGTATA-TTTTTGAAATAT 19965 Query 49776 CAA-TTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 49834 ||| || | |||||||| || |||||||| |||||| | |||| | | | ||| Sbjct 19966 CAAGAGCAACTAATAATCTATCAGCTACAAATTCAATATATTGTGTCATAAGTCTAGAAT 20025 Query 49835 TCATTCCTATAAGTTTAACTGG--AAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATAC 49892 |||| || ||||| | || || |||| | || ||| ||| | | ||||| || Sbjct 20026 TCATACCAATAAGATCTACAGGTAAAGAATCACA-TAA-AAAGTTTCTTTCAACATCAAC 20083 Query 49893 CGCATCTGTTATAATAGATCTAACGGTTTCT-TCACTCGGTGGATGCAA--TAAATG-TT 49948 || |||| |||||| | || ||| | | ||| | || ||| || || Sbjct 20084 AGCTTCTGATATAATTTGTTGTAC----TCTAGAAATTGGTAATTTAAATTTAAGTGATT 20139 Query 49949 TAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 50007 || | || ||||| || ||||| ||| || | ||| || || | |||||||| ||| || Sbjct 20140 TATAAATTAAACAAGCAAAATCTGCA-TGTAAACCTTCATCACGACTAATTAATTCATTA 20198 Query 50008 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT-GGACGCAAATGA 50066 ||||| || || || ||||||| ||||| ||||| | ||||||||| | || ||| | Sbjct 20199 GAAAATGTAAGACCAGGCATTAATCCACGTTTTTTTAACCAAAATATAGCACAGAAACTA 20258 Query 50067 CCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC 50126 |||||||| || || ||||| ||||| || ||| | ||| || || || | Sbjct 20259 -CCAGAAAATAAAATACCTTCAACTGCACAGAATCCAATTAATCTTTCAGCA-AATGAAC 20316 Query 50127 GCT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC----ACAAGGCATC 50181 | | | || ||||| ||| ||||| || || || ||||| || ||| ||| Sbjct 20317 GATCATTATTCATCCATTTTGTTGCCCATTCTGCTTTTTTTTTAACTGCATCAA--CATG 20374 Query 50182 GTTTCTATGGCATTAAAGAGATAGtt-tttttCATTACTATCTTTAACATAAGTATCGAT 50240 | ||| || | ||| | | | || ||| ||| |||| | | ||| ||| || Sbjct 20375 AGT--TATAGCTTCAAATA-ACATTTGACGTTCCTTAATATCACTTATATATTGATCTAT 20431 Query 50241 CA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 50298 | || || ||| |||| || || | |||||| ||||| |||||| | || | | Sbjct 20432 AAGTAATGA--ATAAGTTTCATTGTGTATTTGTTCAATAGCCATTTGAAATGCATA-ATA 20488 Query 50299 CA-TCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCAC 50357 || ||| || || ||||| || | |||| | |||| | |||| | |||||| | || Sbjct 20489 CATTCTTGCTTCAGTAATTTGTATTTCTCTTAAAAAATTTACAGCAAGATTTTCCATAAC 20548 Query 50358 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGG 50417 ||||| ||||| || |||||||| || | |||| ||| |||||||||||||| || Sbjct 20549 AATTCCATCACTTGCAGCAAAAAATGCAAGAACATATTTAATAAAATGTTTTTC--AGGA 20606 Query 50418 TGTTAGTTTA--TT--CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCC 50473 | || || | || |||||| | || |||| | || ||| | |||||| || || Sbjct 20607 TCTT--TTAAACTTCCCCAATCTCTCATGTCTTGACTTAAATCAATTTCTTCAGCTACCC 20664 Query 50474 AAAATGATGCCTCTGCCTTTTTATACAT 50501 |||| || || || || ||||| ||||| Sbjct 20665 AAAAAGAAGCTTCAGCTTTTTTGTACAT 20692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267498137800