Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq141 318 6e-82 >seq141 Length=88262 Score = 318 bits (352), Expect = 6e-82 Identities = 605/877 (69%), Gaps = 29/877 (3%) Strand=Plus/Plus Query 13569 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCC 13628 ||||| ||| |||||||||||| ||||||||||||||| || ||||||||||||| Sbjct 19848 ATAACACCCGCCATTTGATATTCACCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTGA 19907 Query 13629 AGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACA-ACC 13687 || || || ||||| ||||||| ||||| | | |||| ||| | | | | | Sbjct 19908 AGAGAAATCAAATCCATCCAATCAAAAGGATT-AGTAACATTGTATATTTTTGAAATATC 19966 Query 13688 TAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC-ACAAT 13746 || | | || |||||||||||| | ||| ||||||||||| | ||| || || | ||| Sbjct 19967 AAGAGCAACTAATAATCTATCAGCTACAAATTCAATATATTGTGTCAT-AAGTCTAGAAT 20025 Query 13747 TCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAG 13806 ||||||| || || | |||||| | || |||||| | | |||| | | |||| Sbjct 20026 TCATACCAATAAGATCTACAGGTAAAGAATCACATAAAAAGTTTCTTTCAACATCAACAG 20085 Query 13807 CCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTT-----TAGATG-TT 13860 | ||| |||||| |||| || ||| |||| || |||| || || || Sbjct 20086 CTTCTGATATAAT--TTGTTGTACTCT----AGAAATTGGTAATTTAAATTTAAGTGATT 20139 Query 13861 TAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTG 13920 || |||||||||| |||||||| ||| | || ||||| | |||||| | ||| || | Sbjct 20140 TATAAATTAAACAAGCAAAATCTGCATGTAAACCTTCATCACGACTAATTAATTCATTAG 20199 Query 13921 AAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACC 13980 ||||||| | || ||||| ||||| |||||||||||||||||||| ||| || | Sbjct 20200 AAAATGTAAGACCAGGCATTAATCCACGTTTTTTTAACCAAAATATAGCACAGAAACTAC 20259 Query 13981 CGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTT 14040 | ||||| || || || ||||||||| || | ||||||| ||| |||| || | Sbjct 20260 CAGAAAATAAAATACCTTCAACTGCACAGAATCCAATTAATCTTTCAGCAAATGAACGAT 20319 Query 14041 TTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC--CATTGT 14098 || ||| ||||||||| | |||||||| | ||||||||||| ||| ||| Sbjct 20320 CATTATTC---ATCCATTTTGTTGCCCATTCTGCTTTTTTTTTAACTGCATCAACATGAG 20376 Query 14099 TTCAATAGCATTAAATAA-ATATTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAAT 14155 || ||||| | |||||| || | | | ||| || |||| || ||| ||| || Sbjct 20377 TT--ATAGCTTCAAATAACATTTGACGTTCCTTAATATCACTT---ATATATTGATCTAT 20431 Query 14156 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCA 14215 |||||| ||| ||||| |||||| | ||| ||||| || ||||| ||||| | Sbjct 20432 AAGTAATGAATAAGTTTCATTGTGTATTTGTTCAATAGCCATTTGAAATGCATAATACAT 20491 Query 14216 TCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTAT 14275 ||| ||||| | ||||| ||| |||| || | || | |||||| |||| || Sbjct 20492 TCTTGCTTCAGTAATTTGTATTTCTCTTAAAAAATTTACAGCAAGATTTTCCATAACAAT 20551 Query 14276 ACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTT 14335 |||||||| || ||||||||||| | | | ||||||||| | || || || || Sbjct 20552 TCCATCACTTGCAGCAAAAAATGCAAGAACATATTTAATAAAATGTTTTTCAGGATCTTT 20611 Query 14336 GAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACT 14395 | || |||||| | || | | | ||| | ||| ||| || ||||||| Sbjct 20612 TAAACTTCCCCAATCTCTCATGTCTTGACTTAAATCAATTTCTTCAGCTACCCAAAAAGA 20671 Query 14396 AGCGACAGCTTTTTTATACATTACCCATATTTCTTTA 14432 ||| |||||||||| |||||| ||| ||||||||| Sbjct 20672 AGCTTCAGCTTTTTTGTACATTGACCAAATTTCTTTA 20708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727130493000