Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq141 291 8e-74 >seq141 Length=88262 Score = 291 bits (322), Expect = 8e-74 Identities = 596/872 (68%), Gaps = 19/872 (2%) Strand=Plus/Plus Query 13357 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCC 13416 ||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 19848 ATAACACCCGCCATTTGATATTCACCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTGA 19907 Query 13417 AGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACA-ACC 13475 || || || ||||| |||| || ||||| || |||| ||| | | | | | Sbjct 19908 AGAGAAATCAAATCCATCCAATCAAAAGGATTAGTA-ACATTGTATATTTTTGAAATATC 19966 Query 13476 TAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC-ACAAT 13534 || | | ||||||||||||||| | ||| ||||||||||| | ||| || || | ||| Sbjct 19967 AAGAGCAACTAATAATCTATCAGCTACAAATTCAATATATTGTGTCAT-AAGTCTAGAAT 20025 Query 13535 TCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAG 13594 ||||||| || || | |||||| | || | |||||| | | |||| | | |||| Sbjct 20026 TCATACCAATAAGATCTACAGGTAAAGAATCACATAAAAAGTTTCTTTCAACATCAACAG 20085 Query 13595 CCTCGTTTATAATAATCT-TAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAA 13653 | || |||||| | || | | ||| | | | |||| || |||| || Sbjct 20086 CTTCTGATATAATTTGTTGTACTCTAGAAATTGGTAATTTAA-ATTTAAGTGATTTATAA 20144 Query 13654 ATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13713 |||||||| |||||||| ||| | || ||||| | |||||| | ||| || |||||| Sbjct 20145 ATTAAACAAGCAAAATCTGCATGTAAACCTTCATCACGACTAATTAATTCATTAGAAAAT 20204 Query 13714 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 13773 || | || ||||| ||||| |||||||||||||||||||| ||| ||| || ||| Sbjct 20205 GTAAGACCAGGCATTAATCCACGTTTTTTTAACCAAAATATAGCACAGAAACTACCAGAA 20264 Query 13774 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTG 13833 || || || || ||||||||| || | |||| || ||| |||| || | || Sbjct 20265 AATAAAATACCTTCAACTGCACAGAATCCAATTAATCTTTCAGCAAATGAACGATCATTA 20324 Query 13834 TTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC--CATTGTTTCGA 13891 || ||||||||| | |||||||| | ||||||||||| ||| ||| || | Sbjct 20325 TT---CATCCATTTTGTTGCCCATTCTGCTTTTTTTTTAACTGCATCAACATGAGTT--A 20379 Query 13892 TTGCATTGAATAA-ATGTTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTA 13948 | || | ||||| || | | | ||| || |||| || ||| ||| ||||||| Sbjct 20380 TAGCTTCAAATAACATTTGACGTTCCTTAATATCACTT---ATATATTGATCTATAAGTA 20436 Query 13949 AGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAG 14008 | ||| ||||| |||||| | ||| ||||| || ||||| ||||| | ||| | Sbjct 20437 ATGAATAAGTTTCATTGTGTATTTGTTCAATAGCCATTTGAAATGCATAATACATTCTTG 20496 Query 14009 CTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCAT 14068 |||| | ||||| || |||| || | || | ||||| ||||||| |||| Sbjct 20497 CTTCAGTAATTTGTATTTCTCTTAAAAAATTTACAGCAAGATTTTCCATAACAATTCCAT 20556 Query 14069 CACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTT 14128 |||| || ||||||||||| | | | ||||||||| | || || || || | Sbjct 20557 CACTTGCAGCAAAAAATGCAAGAACATATTTAATAAAATGTTTTTCAGGATCTTTTAAAC 20616 Query 14129 TTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGA 14188 || |||||| | || | | | ||| | ||| ||| || ||||||| ||| Sbjct 20617 TTCCCCAATCTCTCATGTCTTGACTTAAATCAATTTCTTCAGCTACCCAAAAAGAAGCTT 20676 Query 14189 CAGCTTTTTTATACATTACCCATATTTCTTTA 14220 |||||||||| |||||| ||| ||||||||| Sbjct 20677 CAGCTTTTTTGTACATTGACCAAATTTCTTTA 20708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478587932557800