Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq120 98.7 8e-16 >seq120 Length=60016 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||||||| | |||| || || || | ||| ||||| || || ||||| | || ||| Sbjct 32302 ACCAAATGTAAAGTGGATTCTTTCTGAATATTATAATCAGATAAAGTACGACCATCTTCC 32243 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 |||||||| || ||||| || || || |||||||| | || | |||||| || || Sbjct 32242 AATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGA 32183 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || |||| || | ||| ||| || | || || |||| || ||||| ||| Sbjct 32182 ATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCTACTTCTAATGTAATAGTCTTT 32123 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || ||||| || |||||||||||||| Sbjct 32122 CCTGTAAGAGTCTTAACAAAAATTTGCAT 32094 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956 ||| || ||||| | ||| || || || | ||| ||||| || || ||||| | || Sbjct 31850 TAAAACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCAGATAAAGTACGACCATC 31791 Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016 ||||||||||| || ||||| || || || |||||||| | || | |||||| || || Sbjct 31790 TTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGAGGAATACCTTCCTTATC 31731 Query 43017 GCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGT 43076 || |||| || | ||| ||| || | || || |||| || ||||| Sbjct 31730 TTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCTACTTCTAATGTAATAGT 31671 Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || ||||| || |||||||||||||| Sbjct 31670 CTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 31638 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956 ||| || ||||| | ||| || || || | ||| ||||| || || ||||| | || Sbjct 32078 TAAAACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCAGATAAAGTACGACCATC 32019 Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016 ||||||||||| || ||||| || || || |||||||| | || | |||||| || || Sbjct 32018 TTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGAGGAATACCTTCCTTATC 31959 Query 43017 GCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGT 43076 || |||| || | ||| ||| || | || || |||| || ||||| Sbjct 31958 TTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCTACTTCTAATGTAATAGT 31899 Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || ||||| || |||||||||||||| Sbjct 31898 CTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 31866 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42897 TAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTC 42956 ||| || ||||| | ||| || || || | ||| ||||| || || ||||| | || Sbjct 31622 TAAAACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCAGATAAAGTACGACCATC 31563 Query 42957 GTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016 ||||||||||| || ||||| || || || |||||||| | || | |||||| || || Sbjct 31562 TTCCAATTGTTTCCCTGCAAATATTAAACGTTGTTGATCAGGAGGAATACCTTCCTTATC 31503 Query 43017 GCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGT 43076 || |||| || | ||| ||| || | || || |||| || ||||| Sbjct 31502 TTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCCACCTCTAATGTGATAGT 31443 Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||| || || || || || |||||||||||||| Sbjct 31442 TTTCCCTGTAAGTGTCTTAACAAAAATTTGCAT 31410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381368926048410