Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq129 374 1e-98 seq141 233 3e-56 >seq129 Length=387383 Score = 374 bits (414), Expect = 1e-98 Identities = 1199/1849 (65%), Gaps = 24/1849 (1%) Strand=Plus/Plus Query 70840 TAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG 70899 || || || || || || ||||| |||| || |||||||||||| | || || Sbjct 181528 TAATATATCCCCGTCTTAAGACCTTTTTTCCAGCCATAAAAATGCATAGAAGAAAGCTTC 181587 Query 70900 GAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCC 70959 | | | | | || | || || ||||||| || ||| || || | | ||| Sbjct 181588 GCAAAATTCGCATTTTCCATATGTATATTCAGAGATTGAGACTGGCAAATATAAGGTCCT 181647 Query 70960 CTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AAC 71018 || ||||| ||||| | || | | ||||||| |||||||||| |||||||| || Sbjct 181648 CTATCTGCTGCCATGTCAATTACTGACTTTTGTTTGATTTCCCAAACTGTTTTATATAAA 181707 Query 71019 TCGCTTAATATCTTCTGGAAGG---TTTGTATTCTGAATGGATCCACCATCTGCAATAAT 71075 | | || |||||||||||| | | |||| ||||| || | ||||| || Sbjct 181708 TTTCGTA-TATCTTCTGGAATACAATCTATATTTTGAATACTGCCGTTGTTAGCAATTAT 181766 Query 71076 CCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGG 71135 | | ||||| |||||||||||| | |||| || | | |||||||| || Sbjct 181767 ATTCTGTTTGAGACGATCATTCCATAATCCTAGCTCGAGCAAGTCATTCAGGAGATGTGG 181826 Query 71136 ATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGG 71195 ||| || | ||| || || || | ||||||||| |||||||| ||| | || Sbjct 181827 ATTCACGATGAAAAACTCGCCGGATAGAACTCTACGATGATAAATATTTGACGTAAAAGG 181886 Query 71196 TTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 71255 || | |||||||||||||| || |||| || ||||| || ||||||||||||| Sbjct 181887 CTCGAAACTTTCATTATTTCCCAATATCTGAGAGGTAGATGCTGTGGGCATAGGTGCCAA 181946 Query 71256 CAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCA 71315 |||| |||||| || ||||| ||| || | ||| || ||||||| || Sbjct 181947 TAATAAGGAATTTCTTAGTCCATGCTTGGAGATCTTTTGTTTAAGTAGGTCCCAATCGCA 182006 Query 71316 AAGATCCGAT---GGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTA 71372 || | || ||| ||| || || ||||| || Sbjct 182007 AATTCCTGAGTTAGGTTTAACTCCCCACATGTCAAATTGTAAAATACCTTTACTTGCAGG 182066 Query 71373 TGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAA 71432 || || || || || || ||||| |||||||| |||| ||||||||| |||||||| Sbjct 182067 AGAACCCAAGTAGGTTTCATAAGGTCCATCTTTTTCTGCTAATTCACAACTAGCCTCTAA 182126 Query 71433 TGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTA-T 71491 || | ||||| || | ||| ||||||| || | || || || ||| | | Sbjct 182127 GGCAGCGTAATAGATAGATTCAAAAATCTCAACGTTTA-ATTTTCTGGCTCCCTCAGACT 182185 Query 71492 CAAATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATA 71550 | |||| || ||| | || || ||||| | ||||||||| ||||| || | | Sbjct 182186 CGTATGGC-AAGCGAAGCATCATGAAACAATCTGCAAGTCCTTGAACACCAATTCCTAAA 182244 Query 71551 GGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 71610 |||| ||| | || ||| ||| ||| ||| | | ||| || |||||| ||| Sbjct 182245 GGTCGATGTTTTAGGTTGGAACTTTTGCTTTCAGGAGTTGAATAGTAGCCAATATCAATA 182304 Query 71611 ATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA- 71669 || ||||| | ||||| || || || || ||||| || ||| ||||||||| Sbjct 182305 ATCTTATTCAAGTTTCTAGTTACAACCTTTGTTACTTCCTTGAGCTTGTCAAAATCAAAA 182364 Query 71670 ----TCTCCCATCTATTA-CAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCT 71724 | | | | ||| | ||||| | | ||| ||||||| || || || || Sbjct 182365 GTTTTTTTCTCTTTATCAACAAACTTGGGAAGTCCAATGGATGCCAAGTTGCAGACAGCA 182424 Query 71725 ACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTT 71784 | ||||| || | ||| | |||||| || || || || |||||| | ||||| Sbjct 182425 ATTTCATTTGCGCTAGTATACTCTATAATCTCTGTACAGAGGTTACTAGAAACAATGGTG 182484 Query 71785 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTA 71844 |||||||||| |||||||| |||| ||| || ||||| || |||| | ||||| Sbjct 182485 CCTAAATTTTTCTGATTACTTTTTTGATTAGCGGCGTCCTTGTAGCAAATATAGGGAGTC 182544 Query 71845 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATATT 71903 || ||||| || |||| || | || ||| | | || | ||||| ||| | || Sbjct 182545 CCCGTTTCTATTTGAGCTTGGAGTATAAGGAACCAAA-GCTTCTGTGCCTTCATTGTCTT 182603 Query 71904 -CTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAG 71962 ||| | | || || |||| || | | ||||||| | || ||||| |||||| Sbjct 182604 TCTTCCACGGCCTTGCT-TTTCATAATCTTCATATAATTTTCTAAAATCGTCACCCCAAA 182662 Query 71963 CATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTA 72022 ||| | | |||| | ||||||| || ||||| | | ||| ||| ||||| | | Sbjct 182663 CATCTTGAAGTCCACGGCATTCATCAGGGCACATAAGGGTCCAGTCTTGATCATTTTCAA 182722 Query 72023 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCT 72082 ||| || |||||| | ||| |||| ||| ||||| || ||||| | | ||| | Sbjct 182723 CTCTTTCCATAAATAAATCGGGAACCCATAGAGCAGGGAAAAGATCACGGCATCTCATTT 182782 Query 72083 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 72142 | || || || ||| ||| | | || | ||| | | || |||| |||||| || | Sbjct 182783 CTTCCTTGCCATGATTTTTTCTGATTTCTATGAATTCAACAACATCAACATGCCAAGGCT 182842 Query 72143 CCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 72202 |||||||||| || || ||||| | || || || || || || ||||| || | Sbjct 182843 CCAAGTATATTGCAATCGCTCCCTTTCTCTTTCCCCCACCTTGGTCGATATATCTTGCAG 182902 Query 72203 TGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGA 72262 | | ||||||||| | | ||||||||| | |||||| || ||||| || || | Sbjct 182903 TATCATTATAAACACGTAGCATTGGAATCAAACCATTTGACCTTCCATTAGTACCTCTTA 182962 Query 72263 TATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAG 72322 |||| ||| | |||||||||| || | | | ||||| || || ||| |||| Sbjct 182963 TATAAGATCCTGTACCACGAATATTACTCACCGCAATACCTAGCCCACCAGCCGTTTTGC 183022 Query 72323 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 72382 || |||||| | | || |||||| |||| || | ||| || ||| || Sbjct 183023 TAATATTTGCGCACTTTGTCAAAGTATCAAAGATTCCATTTATCGAGTCCTCCGCAATCC 183082 Query 72383 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 72442 |||||| ||||| ||||| || ||||| ||| || ||||||||||| || || | Sbjct 183083 TAAGTAAGAAACAAGAGGACATCTGTGGACGAGGAGTACCTGCATTAAATAAAGTCGGCG 183142 Query 72443 AAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATAT 72502 || || ||||| | || | || || || | || |||||||| || || |||| || Sbjct 183143 TGGCATGAGTAAAATACTTCTGTGATAGCAGTTCATAAGTCTCAATTGCCGAATCTAAAT 183202 Query 72503 CCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCT 72562 | | ||||||||| || || | ||||| || ||||| ||||| ||||| |||| Sbjct 183203 CACCGCAATGTATTCCGCAAGCAACTCTCATTAGCAAGTGCTGTGGTCTCTCAACTATCT 183262 Query 72563 TGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 72622 ||| || | | |||| || |||||| | || | |||||| || ||||||||| ||| Sbjct 183263 TGTCATCCACTCTCAATAAATAGGATCTCTCAAGAGTTTTGAATGCAAAATAGTCGTACT 183322 Query 72623 AAAAGTCTCGTTCGTAAAT-AATAACCGAATTGAGTTTATCCTTATATT 72670 |||||||| | |||| ||||| ||||| | ||| || ||| || Sbjct 183323 CAAAGTCTC-TAGAAAAATCAATAATAGAATTTATTTTCTCTCTATTTT 183370 >seq141 Length=88262 Score = 233 bits (258), Expect = 3e-56 Identities = 586/864 (68%), Gaps = 36/864 (4%) Strand=Plus/Plus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 |||||| ||| |||| |||||||| || | |||||| ||||||||||| || |||| Sbjct 19847 CATAACACCCGCCATTTGATATTCACCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTG 19906 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 41880 | || || ||||| ||||||| ||||| |||||||| || | ||||| |||| Sbjct 19907 AAGAGAAATCAAATCCATCCAATCAAAAGGATTAGTAACATTGTATA-TTTTTGAAATAT 19965 Query 41881 CAA-TTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAAT 41939 ||| || | |||||||| || | ||||| |||||| | |||| | | | ||| Sbjct 19966 CAAGAGCAACTAATAATCTATCAGCTACAAATTCAATATATTGTGTCATAAGTCTAGAAT 20025 Query 41940 TCATTCCTATAAGTTTAACTGG--AAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 41997 |||| || ||||| | || || |||| |||| ||| ||| | | ||||| | || Sbjct 20026 TCATACCAATAAGATCTACAGGTAAAGAATCACA-TAA-AAAGTTTCTTTCAACATCAAC 20083 Query 41998 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAA--TAAATG-TTT 42054 || |||| |||||| | |||| | | | ||| | || ||| || ||| Sbjct 20084 AGCTTCTGATATAATTTGTTGTACTCT---AGAAATTGGTAATTTAAATTTAAGTGATTT 20140 Query 42055 AAACATCAAACATGCGAAATC-GCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGG 42113 | | || ||||| || ||||| ||| || | ||| ||||| | |||||||||||| || | Sbjct 20141 ATAAATTAAACAAGCAAAATCTGCA-TGTAAACCTTCATCACGACTAATTAATTCATTAG 20199 Query 42114 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAG-ACGCAAATGAT 42172 |||| || || || ||||||| ||||| ||||| | ||||||||||| || ||| | Sbjct 20200 AAAATGTAAGACCAGGCATTAATCCACGTTTTTTTAACCAAAATATAGCACAGAAACTA- 20258 Query 42173 CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAACCGG 42230 |||||||| || || ||||| ||||| || |||| | ||| || | || | || Sbjct 20259 CCAGAAAATAAAATACCTTCAACTGCACAGAATCCAATTAATCTTTCAGCAAATGAACG- 20317 Query 42231 CACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC----ACAAGGCATC 42286 | | || ||||| ||| ||||| || || || ||||| || ||| ||| Sbjct 20318 -ATCATTATTCATCCATTTTGTTGCCCATTCTGCTTTTTTTTTAACTGCATCAA--CATG 20374 Query 42287 GTTTCTATGGCATTAAAGAGATAGtt-tttttCATTACTATCTTTAACATATGTATCGAT 42345 | ||| || | ||| | | | || ||| ||| |||| | | |||| ||| || Sbjct 20375 AGT--TATAGCTTCAAATA-ACATTTGACGTTCCTTAATATCACTTATATATTGATCTAT 20431 Query 42346 CA--AAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 42403 | || || ||| |||| || || | |||||| ||||| |||||| | || | | Sbjct 20432 AAGTAATGA--ATAAGTTTCATTGTGTATTTGTTCAATAGCCATTTGAAATGCATA-ATA 20488 Query 42404 CA-TCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCAC 42462 || ||| || || |||| |||| |||| | |||| | |||| | |||||| | || Sbjct 20489 CATTCTTGCTTCAGTAATTTGTATTTCTCTTAAAAAATTTACAGCAAGATTTTCCATAAC 20548 Query 42463 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGG 42522 ||||| ||||| || |||||||| || | |||| ||| ||||||| |||||| Sbjct 20549 AATTCCATCACTTGCAGCAAAAAATGCAAGAACATATTTAATAAAATGTTTTTCAGGATC 20608 Query 42523 TGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAA 42582 | |||| | |||||| | || |||| | || ||| | |||||| | |||||| Sbjct 20609 TTTTAAACTTCCCCAATCTCTCATGTCTTGACTTAAATCAATTTCTTCAGCTACCCAAAA 20668 Query 42583 TGATGCTTCTGCCTTTTTATACAT 42606 || ||||| || ||||| ||||| Sbjct 20669 AGAAGCTTCAGCTTTTTTGTACAT 20692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137983560200