Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq120 147 2e-30 >seq120 Length=60016 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||||| ||| ||||| |||||||||||||| ||| ||| |||| ||| Sbjct 32302 ACCAAATGTAAAGTGGATTCTTTCTGAATATTATAATCAGATAAAGTACGACCATCTTCC 32243 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||||||||||||||| || ||||| || || |||| | |||||| |||||| | Sbjct 32242 AATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGA 32183 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 |||||| ||| || | ||| ||||||| || || || || | ||||| || || Sbjct 32182 ATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCTACTTCTAATGTAATAGTCTTT 32123 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | |||||| ||||| |||||||| Sbjct 32122 CCTGTAAGAGTCTTAACAAAAATTTGCAT 32094 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | | ||| || ||||||| || ||||| |||||||||||||| Sbjct 31865 ACCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCAGA 31806 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| ||| |||| ||||||||||||||||||||||| || ||||| || || |||| Sbjct 31805 TAAAGTACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGAGG 31746 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| |||||| ||||||| ||| || | ||| ||||||| || || || Sbjct 31745 AATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCTAC 31686 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || || | |||||| ||||| |||||||| Sbjct 31685 TTCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 31638 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | | ||| || ||||||| || ||||| |||||||||||||| Sbjct 32093 ACCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCAGA 32034 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| ||| |||| ||||||||||||||||||||||| || ||||| || || |||| Sbjct 32033 TAAAGTACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGAGG 31974 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| |||||| ||||||| ||| || | ||| ||||||| || || || Sbjct 31973 AATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCTAC 31914 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || || | |||||| ||||| |||||||| Sbjct 31913 TTCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 31866 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | | ||| || ||||||| || ||||| |||||||||||||| Sbjct 31637 ACCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCAGA 31578 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| ||| |||| ||||||||||| ||||||||||| || ||||| || || |||| Sbjct 31577 TAAAGTACGACCATCTTCCAATTGTTTCCCTGCAAATATTAAACGTTGTTGATCAGGAGG 31518 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| |||||| ||||||| ||| || | ||| ||||||| || ||||| Sbjct 31517 AATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCCAC 31458 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || | ||||| ||||| |||||||| Sbjct 31457 CTCTAATGTGATAGTTTTCCCTGTAAGTGTCTTAACAAAAATTTGCAT 31410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354776973041460