Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq141 250 2e-61 >seq141 Length=88262 Score = 250 bits (276), Expect = 2e-61 Identities = 584/865 (68%), Gaps = 31/865 (4%) Strand=Plus/Plus Query 12861 TTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTT 12920 |||||||||| | |||||||||||||||||| || ||||| |||| | ||||| | Sbjct 19861 TTTGATATTCACCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTGAAGAGAAATCAAAT 19920 Query 12921 CCATAAAATCGAAAGGATTTTTCGAACAATAG-TATTTTTTACACCCTAATT-CTAGTAA 12978 |||| |||| |||||||| | |||| | ||||||| | | || | | ||| Sbjct 19921 CCATCCAATCAAAAGGATTAGT--AACATTGTATATTTTTGAAATATCAAGAGCAACTAA 19978 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC-ACAGTTCATTCCTATTA 13037 ||||| ||||| ||||| || || || ||| |||| || || | | ||||| || || | Sbjct 19979 TAATCTATCAGCTACAAATTCAATATATTGTGTCAT-AAGTCTAGAATTCATACCAATAA 20037 Query 13038 ATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTC-GATA-AC 13095 | |||||| | || || |||||||||| |||| | |||||| ||||| |||| | Sbjct 20038 GATCTACAGGTAAAGAATCACATAAAAAGTTTCTTTCAACATCAACAGCTTCTGATATAA 20097 Query 13096 TATGT----CTCTT--ATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCAT 13149 | ||| |||| | | || | ||| |||| | ||| ||| | || | Sbjct 20098 TTTGTTGTACTCTAGAAATTGGTAATTTAA------ATTTAAGTGAT--TTATAAATTAA 20149 Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 ||| |||||||| || || |||||||| | ||| |||| || || |||||||| || Sbjct 20150 ACAAGCAAAATCTGCATGTAAACCTTCATCACGACTAATTAATTCATTAGAAAATGTAAG 20209 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaa 13269 ||| ||||| | || |||||||| | ||||||||||||| || ||| ||||| || Sbjct 20210 ACCAGGCATTAATCCACGTTTTTTTAACCAAAATATAGCACAGAAACTACCAGAAAATAA 20269 Query 13270 TATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTC 13329 || ||||||||||| || | || || |||||| || | | || || ||| || Sbjct 20270 AATACCTTCAACTGCACAGAATCCAATTAATCTTTCAGCAAATGAACGATCATTATTC-- 20327 Query 13330 TATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTCATATTTTCTATTGCGT 13388 ||||| ||| | ||||| | |||||||| |||||| ||| | | || ||| || | Sbjct 20328 -ATCCATTTTGTTGCCCATTCTGCTTTTTTTTTAACTGCA-TCAACATGAGTTATAGCTT 20385 Query 13389 TAAATAAATAAttt--ttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATA 13446 |||||| |||| ||||||| | || ||||| |||||| | ||| ||| Sbjct 20386 CAAATAA--CATTTGACGTTCCTTAATATCACTTATATATTGATCTATAAGTAATGAATA 20443 Query 13447 CATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGA 13506 |||| || || | ||| || || ||||| || ||||| | ||| || || | Sbjct 20444 AGTTTCATTGTGTATTTGTTCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCAGT 20503 Query 13507 TACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGC 13566 | || | ||| |||| || | || | ||||| |||| || || ||||| || Sbjct 20504 AATTTGTATTTCTCTTAAAAAATTTACAGCAAGATTTTCCATAACAATTCCATCACTTGC 20563 Query 13567 AGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCA 13626 ||||||||| ||||| | | |||||||| | |||||| ||| || || ||| Sbjct 20564 AGCAAAAAATGCAAGAACATATTTAATAAAATGTTTTTCAGGATCTTTTAAACTTCCCCA 20623 Query 13627 ATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTT 13686 |||| | |||| |||||| | || ||| | |||||||||||| |||| || Sbjct 20624 ATCTCTCATGTCTTGACTTAAATCAATTTCTTCAGCTACCCAAAAAGAAGCTTCAGCTTT 20683 Query 13687 CTTATACATCATCCATATATCCTTA 13711 || ||||| ||| || || ||| Sbjct 20684 TTTGTACATTGACCAAATTTCTTTA 20708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430981638373290