Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq130 228 2e-54 seq120 212 1e-49 seq141 197 3e-45 >seq130 Length=374773 Score = 228 bits (252), Expect = 2e-54 Identities = 188/229 (82%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || |||||||||||||| |||||||| ||||||||||||||||| || Sbjct 265136 CCACCTCTAAGTCTCAGTACTAGATGTAAGGTAGATTCCTTCTGAATATTATAGTCCGAA 265077 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 |||||||| || ||||| | |||||| |||||||| || | | ||||||||||||||| Sbjct 265076 AGAGTTCTGCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGA 265017 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 ||||| || || ||||||||||| ||||| |||||||| | ||||| || || ||| Sbjct 265016 ATTCCCTCCTTGTCCTGAATCTTAGCTTTGACATTTTCAATAGTATCAGAGGGCTCGACC 264957 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTT 104561 || | ||||| ||||| || || |||||||||||||| |||||||||| Sbjct 264956 TCCAAAGTAATGGTCTTGCCTGTTAGTGTTTTTACAAAGATCTGCATTT 264908 >seq120 Length=60016 Score = 212 bits (234), Expect = 1e-49 Identities = 185/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | | |||| |||||| ||||||||||||||||||||||| ||| Sbjct 31867 ATACCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCA 31808 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||| | ||| ||||| | ||||||||| ||||| |||| | |||||||||||| Sbjct 31807 GATAAAGTACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGA 31748 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| ||||| |||||||| |||||||| | ||||| |||||| Sbjct 31747 GGAATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCT 31688 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| |||||||||||| || ||||| || || ||||| || ||||| Sbjct 31687 ACTTCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 31638 Score = 212 bits (234), Expect = 1e-49 Identities = 185/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | | |||| |||||| ||||||||||||||||||||||| ||| Sbjct 32095 ATACCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCA 32036 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||| | ||| ||||| | ||||||||| ||||| |||| | |||||||||||| Sbjct 32035 GATAAAGTACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGA 31976 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| ||||| |||||||| |||||||| | ||||| |||||| Sbjct 31975 GGAATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCT 31916 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| |||||||||||| || ||||| || || ||||| || ||||| Sbjct 31915 ACTTCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 31866 Score = 208 bits (230), Expect = 2e-48 Identities = 184/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || | |||||| || |||||||||||||||||||| ||| Sbjct 32323 ATACCACCTCTAAGACGCAGGACCAAATGTAAAGTGGATTCTTTCTGAATATTATAATCA 32264 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||| | ||| ||||| | ||||||||| ||||| |||| | |||||||||||| Sbjct 32263 GATAAAGTACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGA 32204 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| ||||| |||||||| |||||||| | ||||| |||||| Sbjct 32203 GGAATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCT 32144 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| |||||||||||| || ||||| || || ||||| || ||||| Sbjct 32143 ACTTCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 32094 Score = 203 bits (224), Expect = 7e-47 Identities = 183/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | | |||| |||||| ||||||||||||||||||||||| ||| Sbjct 31639 ATACCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCA 31580 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||| | ||| ||||| | |||||| || ||||| |||| | |||||||||||| Sbjct 31579 GATAAAGTACGACCATCTTCCAATTGTTTCCCTGCAAATATTAAACGTTGTTGATCAGGA 31520 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| ||||| |||||||| |||||||| | ||||| ||||| Sbjct 31519 GGAATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCC 31460 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||| ||| ||||| || || |||||||| || ||||| || ||||| Sbjct 31459 ACCTCTAATGTGATAGTTTTCCCTGTAAGTGTCTTAACAAAAATTTGCAT 31410 >seq141 Length=88262 Score = 197 bits (218), Expect = 3e-45 Identities = 571/861 (66%), Gaps = 27/861 (3%) Strand=Plus/Minus Query 268742 ATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGAC 268801 ||||||||| | || | |||||||||||| | |||||| | ||| | | | ||| Sbjct 20692 ATGTACAAAAAAGCTGAAGCTTCTTTTTGGGTAGCTGAAGAAATTGATTTAAGTCAAGAC 20633 Query 268802 TTAATAGATTGGAAAAATTTAAAA---CCAGAAGAAAGAAGATTTATATCTTATATTCTT 268858 | | ||||||| || ||||||| || ||| ||| | ||||| ||| ||||| Sbjct 20632 ATGAGAGATTGGGGAAGTTTAAAAGATCCTGAA-AAACA--TTTTATTAAATATGTTCTT 20576 Query 268859 GCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAA 268918 || |||||||| | |||||||| || |||| |||||||| | | || || | | Sbjct 20575 GCATTTTTTGCTGCAAGTGATGGAATTGTTATGGAAAATCTTGCTGTAAATTTTTTAAGA 20516 Query 268919 GAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGA--AAATA 268976 || |||| ||| ||||||| ||| | ||| | ||| || || ||||| || ||||| Sbjct 20515 GAAATACAAATTACTGAAGCAAGAATGTATTATGCATTTCAAATGGCTATTGAACAAATA 20456 Query 268977 TTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGA 269036 || | | | | | || || | |||||| |||||| ||||| || ||| Sbjct 20455 CACAATGAAACTTATTCA--TTACTTATAGATCAATATATAAGTGATATTAAGGAACGTC 20398 Query 269037 AAAGACTATTTTCTTCTATGAGAACT-ATG--GACTGTGTGAGaaaaaaaTCTGAATGGG 269093 ||| ||||| |||| |||| ||| || || | ||||||| | ||||||| Sbjct 20397 AAATGTTATTTGAAGCTAT---AACTCATGTTGATGCAGTTAAAAAAAAAGCAGAATGGG 20341 Query 269094 CTCTGAAATGGATAAACGAT-AGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCT 269152 | |||||||| || || | || | || | ||||| ||| ||| || || Sbjct 20340 CAACAAAATGGATGAATAATGATCGTTCATT-TGCTGAAAGATTAATTGGATTCTGTGCA 20282 Query 269153 GTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGC 269212 || |||||||| || ||||| || ||| ||||| |||||||| || ||| | || Sbjct 20281 GTTGAAGGTATTTTATTTTCTGGTAGTTTCTGTGCTATATTTTGGTTAAAAAAACGTGGA 20222 Query 269213 CTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGC 269272 | ||||| || | || || ||||| ||||| || || | || ||||||||||| ||| Sbjct 20221 TTAATGCCTGGTCTTACATTTTCTAATGAATTAATTAGTCGTGATGAAGGTTTACA-TGC 20163 Query 269273 -GACTTCGCTTGTTTATTATTTACTAATTATCTTTCACACAAACCTTCTCAA--GATAGA 269329 || || ||||||||| ||||| ||| | ||| | ||| || ||| |||| Sbjct 20162 AGATTTTGCTTGTTTA--ATTTA-TAAATCACTTAAATTTAAA--TTACCAATTTCTAGA 20108 Query 269330 GTATACGAAATTATAGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTA 269389 ||| | |||||||| ||||||| ||| |||| | | ||| || || || || Sbjct 20107 GTACAACAAATTATATCAGAAGCTGTTGATGTTGAAAGAAACTTTTTATGTGATTCTTTA 20048 Query 269390 TCTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCT 269449 || | |||||||| ||||||||| | | |||| | |||||||| | || ||| || Sbjct 20047 CCTGTAGATCTTATTGGTATGAATTCTAGACTTATGACACAATATATTGAATTTGTAGCT 19988 Query 269450 GATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAATATAACGTTGAAAATCCGTTTAGT 269509 |||||||| | || || | | || |||| ||| || ||| ||||| ||| | Sbjct 19987 GATAGATTATTAGTTGCTCTTGATATTTCAAAAATATACAATGTTACTAATCCTTTTGAT 19928 Query 269510 TTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAAGCGGGTAAGTAAC 269569 | ||||| || || | ||||||| ||||||| || || || | || || | Sbjct 19927 TGGATGGATTTGATTTCTCTTCAAGGTAAAACTAATTTTTTTGAAAAAAGAGTTGGTGAA 19868 Query 269570 TATCAGAAAATGGGTGTAATG 269590 ||||| | |||||| ||| Sbjct 19867 TATCAAATGGCGGGTGTTATG 19847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151396260917660