Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq93 149 7e-31 seq138 134 2e-26 >seq93 Length=13655 Score = 149 bits (164), Expect = 7e-31 Identities = 529/813 (65%), Gaps = 34/813 (4%) Strand=Plus/Plus Query 6700 GGATGAGGATTATAATCTAACAATTCAAAATCTTCAAATTTAAAATCACATAAATTATCA 6759 |||||||||| || | | | ||||| |||||| |||||||||| | || ||| Sbjct 4044 GGATGAGGATAGTAGCCAATAATTTCAATATCTTCCCATTTAAAATCTTCAATATGATCT 4103 Query 6760 GACtttttttttAATATTACAACAGGTGAAGGTTTTATTGATCGAGTTAATTGTTCTTTT 6819 | | |||| ||| ||| ||| | ||| | || ||||||||||||| Sbjct 4104 ATTTCTCTTTTAAATCTTAATTGAGGAAATGGTCTAGGAAGACGTTTTAATTGTTCTTTA 4163 Query 6820 ATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCT 6879 | | | ||||| | ||||||||||||||| || | | ||| | |||||| Sbjct 4164 AGTTGATCAAGATGATTTTCATAAATATGAGCATCACCAATAAAAATAATTAGTTCACCA 4223 Query 6880 GGTTTCATATCAACAG-CTTGAGCAATTAA-ATATGTTAATAATGCATAAGAAGCTACAT 6937 || || ||| | ||| |||| || | | ||| | || | ||||||||| || | || Sbjct 4224 GGCTT-ATAACCACAAACTTGTGCTAACATCATACAT-AACATTGCATAAGATGCAATAT 4281 Query 6938 TAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAAAATAT 6997 |||| || ||||| || | ||| ||||||||| | | || |||| ||| Sbjct 4282 TAAATGGAGATCCTAAACCTAAATCACAACTTCTTTGATATAAAGTAGAACATAATCTAT 4341 Query 6998 TGTCTATAGCA---TAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCTA 7054 | || || || ||| ||||| | || ||||||||||| ||||| | ||| || Sbjct 4342 TTTCATTATCAACGTAATATTGAGATAAGACATGACATGGTGGTAATGCCATTTGAGATA 4401 Query 7055 TATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATT 7114 |||||||||||||||| || | || | | ||| || || ||||| ||||||| Sbjct 4402 ATGCAGATGGATTCCAAGCTGTAAGTATATGCCTTCTTTCTTTAGGATTATTTTTTAA-- 4459 Query 7115 TTGTTATAATTATTT---GTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAAT 7171 || | ||||| || ||||||||| | ||| ||||| ||||||| ||| || | Sbjct 4460 -TGATTCAATTAATTTAGATAATTGATCAACACCAACACCTTGATAATTATCATG-CATT 4517 Query 7172 -TTATATAATTAGCTCC---AAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCA 7227 || |||| | |||| |||||| | ||||||||| ||||| || || ||||||||| Sbjct 4518 GTTTTATATT---CTCCATTAAAATGACGCCATTGAAAACCATATATTGGTCCTAAATCA 4574 Query 7228 CCTTCTTCACGATGATTAAATCCTAATCGATTTAAATTAGATTTTGATCCATAAGCATCC 7287 |||||| | ||| || || | | | ||||| ||| || |||| | | Sbjct 4575 TTTTCTTCTCTATGTCCTAAACCAATTTTTTCTAAATATTCTTTAGAACCATTTCCTGAC 4634 Query 7288 CAAATATGTACAGAtttttttGATAAATTTAAAGA-----ATTTGTAGATCCTTTAAGGA 7342 ||||||| || ||||||| | |||| || || ||||||| ||||||| | Sbjct 4635 CAAATATAAAC---TTTTTTT--TCAATTAAATGATTACCATTTGTATCACCTTTAATAA 4689 Query 7343 ACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGA 7402 |||| | | |||||| | |||| | | | | | |||| || || ||||| || | Sbjct 4690 ACCACATTAATTCTTCAAATATTGCTCTAATAGCAACTTTTTTAGTTGTTAATAATGGAA 4749 Query 7403 ATG---TACTTAAATCATATCTATTCTGTAAACCAAATACTGAAAGAGTACCTGTTCCAG 7459 ||| ||||||||| | | || | ||||||| |||| ||| | || | Sbjct 4750 ATGATTCTCTTAAATCAAAACGCATCATTTGTCCAAATATTGAATATGTATTAATACCCG 4809 Query 7460 TTCTATCAATTTTAAGTCTTCCATTTGCTAAAA 7492 |||||| | || | ||||||| |||||| Sbjct 4810 TTCTATTTTCTCTATATGATCCATTTTCTAAAA 4842 >seq138 Length=200515 Score = 134 bits (148), Expect = 2e-26 Identities = 332/496 (67%), Gaps = 31/496 (6%) Strand=Plus/Minus Query 164494 aaaaaaTTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGT 164553 ||| ||||||| | ||||||||||||| | ||||| ||||||| || || ||| Sbjct 16621 AAAGAATTAGGGATTCAACATATAAAAGGCTTAATATTATATGGACCACCAGGAACAGGT 16562 Query 164554 AAAACATTAATGGCTCGATGCATTGCTCAAGCTTTTAAATC--GCGACCCGTTAAAATTG 164611 ||||| || || ||| | || || | | || ||| | | || || ||| |||| Sbjct 16561 AAAACCTTGATAGCTAGGCAGATAGCAAAGGTATTAAAAGCAAGGGAACC--TAAGATTG 16504 Query 164612 TTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGT 164671 |||||||||| ||| |||| ||||||||||| ||| | |||| ||| | || || | Sbjct 16503 TTAATGGTCCAGAAATATTAAACAAATATGTTGGTCAAAGTGAAGAGAATATCAGGAATT 16444 Query 164672 TGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTTTAGCTAGTAA--ATTACATGT 164729 | || |||||||||| |||||| | || || ||| | || | | | ||||| | Sbjct 16443 TATTCAAGGAGGCTGAGGAAGAATACAAACAAAAAGG--TGACTTTTCACCACTACATAT 16386 Query 164730 TATTGTTTTTGATGAGATAGATGCTCTTTGCAAAA----------AACGTGGTG-ATAAT 164778 |||| | || ||||| ||||||| |||| |||| ||||| | | | Sbjct 16385 TATTATATTGGATGAATTAGATGCAATTTGTAAAAGTAGAGGAGCAACGTCAAGCAGTAC 16326 Query 164779 ATTA----TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATC 164834 || | | ||| || || ||||| | || |||||| |||||||| ||| Sbjct 16325 ATCAGGAGTAGGAGATAGTGTTGTAAATCAACTTCTAAGTAAAATTGATGGTGT-TAATA 16267 Query 164835 CT-TAAATAATA---TTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATG 164890 | ||||||||| |||||||| || ||||| ||| || |||| | | ||||||| Sbjct 16266 GTATAAATAATATTCTTTTAATT---GGAATGACGAACAGAATTGATCTTCTAGATGATG 16210 Query 164891 CTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAG 164950 | ||||| ||||||| |||| ||| | |||| ||||| || || || || | | Sbjct 16209 CACTATTAAGACCTGGAAGATTTGAAGTTCAAATTGAAATTGGTTTGCCAGATAGTTCGG 16150 Query 164951 GACGCCTTCAAATTTT 164966 |||| ||| |||| || Sbjct 16149 GACGTCTTGAAATATT 16134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595870919982000