Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq120 111 1e-19 seq130 109 5e-19 >seq120 Length=60016 Score = 111 bits (122), Expect = 1e-19 Identities = 174/247 (70%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||| | || || || || || ||||||||||| || || | Sbjct 31649 AAAAATTTGCATACCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAAT 31590 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 |||||||| ||| || || ||| |||| ||||| || |||| ||||| | | Sbjct 31589 ATTATAATCAG--ATAAAGTACGACCATCTTCCAATTGTTTCCCTGCAAATATTAAACGT 31532 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || ||||| |||||||||||||| || || | ||||||||| || || | | || Sbjct 31531 TGTTGATCAGGAGGAATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTA 31472 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | | || || || | ||||| ||||| || ||||| || || ||||| || ||| Sbjct 31471 TCTGATGGTTCCACCTCTAATGTGATAGTTTTCCCTGTAAGTGTCTTAACAAAAATTTGC 31412 Query 95006 ATGCTTA 95012 || |||| Sbjct 31411 ATCCTTA 31405 Score = 111 bits (122), Expect = 1e-19 Identities = 171/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||| | || || || || || ||||||||||| || || | Sbjct 31877 AAAAATTTGCATACCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAAT 31818 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 |||||||| ||| || || ||| |||| |||||||| |||| ||||| | | Sbjct 31817 ATTATAATCAG--ATAAAGTACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGT 31760 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || ||||| |||||||||||||| || || | ||||||||| || || | | || Sbjct 31759 TGTTGATCAGGAGGAATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTA 31700 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | | || || || | || || || ||||| |||||||| || ||||| || ||| Sbjct 31699 TCTGATGGTTCTACTTCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGC 31640 Query 95006 AT 95007 || Sbjct 31639 AT 31638 Score = 111 bits (122), Expect = 1e-19 Identities = 171/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||| | || || || || || ||||||||||| || || | Sbjct 32105 AAAAATTTGCATACCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAAT 32046 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 |||||||| ||| || || ||| |||| |||||||| |||| ||||| | | Sbjct 32045 ATTATAATCAG--ATAAAGTACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGT 31988 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || ||||| |||||||||||||| || || | ||||||||| || || | | || Sbjct 31987 TGTTGATCAGGAGGAATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTA 31928 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | | || || || | || || || ||||| |||||||| || ||||| || ||| Sbjct 31927 TCTGATGGTTCTACTTCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGC 31868 Query 95006 AT 95007 || Sbjct 31867 AT 31866 Score = 107 bits (118), Expect = 2e-18 Identities = 166/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 94775 TACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAA 94834 |||| || ||||| | |||| ||||| || ||||| ||||| || || | |||||| Sbjct 32326 TACATACCACCTCTAAGACGCAGGACCAAATGTAAAGTGGATTCTTTCTGAATATTATAA 32267 Query 94835 TCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 || ||| || || ||| |||| |||||||| |||| ||||| | ||| |||| Sbjct 32266 TCAG--ATAAAGTACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGAT 32209 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | |||||||||||||| || || | ||||||||| || || | | || || | Sbjct 32208 CAGGAGGAATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATG 32149 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || || || ||||| |||||||| || ||||| || ||||| Sbjct 32148 GTTCTACTTCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 32094 >seq130 Length=374773 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 94778 ACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCG 94837 || || ||||| | || || || | || || ||||||||||| || | ||||| || Sbjct 265139 ACACCACCTCTAAGTCTCAGTACTAGATGTAAGGTAGATTCCTTCTGAATATTATAGTCC 265080 Query 94838 CTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 | ||| || ||| |||| ||||| || ||||||| || | || ||||| ||| Sbjct 265079 GAAAGAGTTCTGCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGCTGTTGATCAGGA 265020 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCG 94957 ||||| || || ||||| | ||| || || ||||| | | ||| |||| | | ||| Sbjct 265019 GGAATTCCCTCCTTGTCCTGAATCTTAGCTTTGACATTTTCAATAGTATCAGAGGGCTCG 264960 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | || ||||| || || || || ||||| |||||||||||||| Sbjct 264959 ACCTCCAAAGTAATGGTCTTGCCTGTTAGTGTTTTTACAAAGATCTGCAT 264910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290387472200