Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq141 255 6e-63 >seq141 Length=88262 Score = 255 bits (282), Expect = 6e-63 Identities = 579/861 (67%), Gaps = 23/861 (3%) Strand=Plus/Plus Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||||| |||| |||||||||||| |||||||| || || |||| | || || | | Sbjct 19861 TTTGATATTCACCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTGAAGAGAAATCAAAT 19920 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATA 21305 |||| ||||||| ||||| | || ||||||| | | | || | ||||| Sbjct 19921 CCATCCAATCAAAAGGATTAGTAACATTGTATATTTTTGAAATATCAAGAGCAACTAATA 19980 Query 21306 ATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATT 21365 ||||||| ||||||||||| |||||||| ||| | | | |||||||||| || | | Sbjct 19981 ATCTATCAGCTACAAATTCAATATATTGTGTCATAAGTCTAGAATTCATACCAATAAGAT 20040 Query 21366 TTACAGGAAGAGCTTTTGTCA-AAAAAGATT-TTTCTATAGAGACGGCTTCAACAATTAT 21423 |||||| | || | || |||||| || |||| | | || ||||| || || Sbjct 20041 CTACAGGTAAAGAATCA--CATAAAAAGTTTCTTTCAACATCAACAGCTTCTGATATAAT 20098 Query 21424 ATTTATTATCCTAGATGTACTAGGGGGATACAAT--AATTG-TTTAAACATCAAACATGC 21480 | | || ||||| | | || | ||| || || |||| | || ||||| || Sbjct 20099 TTGTTGTACTCTAGA---AATTGGTAATTTAAATTTAAGTGATTTATAAATTAAACAAGC 20155 Query 21481 AAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGG 21540 |||||| ||| ||||||||||| | ||| |||||||||||||||||||| | ||| || Sbjct 20156 AAAATCTGCATGTAAACCTTCATCACGACTAATTAATTCATTAGAAAATGTAAGACCAGG 20215 Query 21541 CATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAATGC 21599 ||||||||| | ||||||||||||||||| | | || | || || ||||| ||||| | Sbjct 20216 CATTAATCCACGTTTTTTTAACCAAAATATAG-CACAGAAACTACCAGAAAATAAAATAC 20274 Query 21600 CCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCC 21659 | ||||| ||| ||| ||| ||||| |||| | ||| | || |||| | |||| Sbjct 20275 CTTCAACTGCACAGAATCCAATTAATCTTTCAGCAAATGAACGATCATTATTC---ATCC 20331 Query 21660 ATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAA 21719 ||||| |||||||| ||| |||| ||||| ||||| | ||||| || ||| Sbjct 20332 ATTTTGTTGCCCATTCTGCTTTTTTTTTAACTGCATCAACATGAGTTATAGC--TTCAAA 20389 Query 21720 GATGAttt--ttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTC 21777 | |||| ||| | | ||| |||| ||| |||| Sbjct 20390 TAACATTTGACGTTCCTTAATATCACTTATATATTGATCTATAAGTAATGAATAAGTTTC 20449 Query 21778 AGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTG 21837 | ||||| | ||| || || || |||||| | ||| | |||||| || | | ||| Sbjct 20450 ATTGTGTATTTGTTCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCAGTAATTTG 20509 Query 21838 AA--CCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCA 21895 | ||| || ||||| | ||| | ||||| | || ||||||||||| || ||| Sbjct 20510 TATTTCTCTTAA-AAAAT-TTACAGCAAGATTTTCCATAACAATTCCATCACTTGCAGCA 20567 Query 21896 AAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCT 21955 |||||||| | | || ||| ||||||| | ||| |||| |||| || ||||||| Sbjct 20568 AAAAATGCAAGAACATATTTAATAAAATGTTTTTCAGGATCTTTTAAACTTCCCCAATCT 20627 Query 21956 AATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTA 22015 | |||| |||||| | |||||||| | |||||| ||| ||| ||||| Sbjct 20628 CTCATGTCTTGACTTAAATCAATTTCTTCAGCTACCCAAAAAGAAGCTTCAGCTTTTTTG 20687 Query 22016 TACATAATCCAGATATCATTA 22036 ||||| ||| || || ||| Sbjct 20688 TACATTGACCAAATTTCTTTA 20708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531899835929800