Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq129 412 4e-110 seq141 212 8e-50 >seq129 Length=387383 Score = 412 bits (456), Expect = 4e-110 Identities = 1191/1817 (66%), Gaps = 38/1817 (2%) Strand=Plus/Plus Query 62034 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG 62093 || || || ||||| || ||||| |||| || |||||||||||| | || || Sbjct 181528 TAATATATCCCCGTCTTAAGACCTTTTTTCCAGCCATAAAAATGCATAGAAGAAAGCTTC 181587 Query 62094 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 62153 | | || ||| || | | ||||| ||||||| ||||||| || || | | ||| Sbjct 181588 GCAAAATTCGCATTTTCCATATGTATATTCAGAGATTGAGACTGGCAAATATAAGGTCCT 181647 Query 62154 CTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AAC 62212 || ||||| ||||| | || | | ||||||| |||||||||| |||||||| || Sbjct 181648 CTATCTGCTGCCATGTCAATTACTGACTTTTGTTTGATTTCCCAAACTGTTTTATATAAA 181707 Query 62213 TCGCTTAATATCTTCTGGAAGG---TTTGTATTCTGAATGGATCCACCATCTGCCATAAT 62269 | | || |||||||||||| | | |||| ||||| || | || || || Sbjct 181708 TTTCGTA-TATCTTCTGGAATACAATCTATATTTTGAATACTGCCGTTGTTAGCAATTAT 181766 Query 62270 CCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGG 62329 | | |||| ||||||||||||| | |||| || | | |||||||| || Sbjct 181767 ATTCTGTTTGAGACGATCATTCCATAATCCTAGCTCGAGCAAGTCATTCAGGAGATGTGG 181826 Query 62330 ATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGG 62389 ||| || | ||| || || || | ||||| ||| |||||||| ||| | || Sbjct 181827 ATTCACGATGAAAAACTCGCCGGATAGAACTCTACGATGATAAATATTTGACGTAAAAGG 181886 Query 62390 TTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 62449 || | |||||||||||||| || |||| || ||||| || ||||||||||||| Sbjct 181887 CTCGAAACTTTCATTATTTCCCAATATCTGAGAGGTAGATGCTGTGGGCATAGGTGCCAA 181946 Query 62450 CAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCA 62509 ||||| |||||| || || | | ||| || | ||| || | ||||||| || Sbjct 181947 TAATAAGGAATTTCTTAGTCCATGCTTGGAGATCTTTTGTTTAAGTAGGTCCCAATCGCA 182006 Query 62510 AAGATCCGAC---GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTA 62566 || | || ||| ||| ||||| |||||| ||||| || Sbjct 182007 AATTCCTGAGTTAGGTTTAACTCCCCACATGTCAAATTGTAAAATACCTTTACTTGCAGG 182066 Query 62567 CGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAA 62626 || || | || || || || ||||| || || || |||| ||||||||| |||||||| Sbjct 182067 AGAACCCAAGTAGGTTTCATAAGGTCCATCTTTTTCTGCTAATTCACAACTAGCCTCTAA 182126 Query 62627 TGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCC---AGGCT 62683 ||| ||||||| || | ||| || |||| |||| || || || ||| || || Sbjct 182127 GGCAGCGTAATAGATAGATTCAAAAATCTCAACGTTTA-ATTTTCTGGCTCCCTCAGACT 182185 Query 62684 ATCAAATGGATAATTTAAG-AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGA 62742 | |||| || ||| | || || || || | ||||||||||||||| || | Sbjct 182186 --CGTATGGC-AAGCGAAGCATCATGAAACAATCTGCAAGTCCTTGAACACCAATTCCTA 182242 Query 62743 TAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTA 62802 ||||| |||| | || || ||| ||| ||| | | ||| || |||||| | Sbjct 182243 AAGGTCGATGTTTTAGGTTGGAACTTTTGCTTTCAGGAGTTGAATAGTAGCCAATATCAA 182302 Query 62803 TAATTTTATTGAGATTTCTG---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAAT 62859 |||| ||||| | ||||| |||| ||||| || ||||| || ||| ||||| Sbjct 182303 TAATCTTATTCAAGTTTCTAGTTACAAC--CTTTGTT-ACTTCCTTGAGCTTGTCAAAAT 182359 Query 62860 CAAA-----TCGCCCATCTATTA-CAAACATGTTCAAGGCAACAGATGCCAGATTACAAA 62913 |||| | | | ||| | ||||| || | ||| ||||||| || || | Sbjct 182360 CAAAAGTTTTTTTCTCTTTATCAACAAACTTGGGAAGTCCAATGGATGCCAAGTTGCAGA 182419 Query 62914 CGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGA 62973 | || | ||||| || | ||| | ||| ||||| || || || |||||| | | Sbjct 182420 CAGCAATTTCATTTGCGCTAGTATACTCTATAATCTCTGTACAGAGGTTACTAGAAACAA 182479 Query 62974 TAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATG 63033 | || |||||||||| |||||||| |||| ||| || ||||| || ||| | | Sbjct 182480 TGGTGCCTAAATTTTTCTGATTACTTTTTTGATTAGCGGCGTCCTTGTAGCAAATATAGG 182539 Query 63034 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATT 63092 |||| || ||||| || |||| || | || ||| | | || | ||||| ||| Sbjct 182540 GAGTCCCCGTTTCTATTTGAGCTTGGAGTATAAGGAACCAAA-GCTTCTGTGCCTTCATT 182598 Query 63093 ATAGAT-TTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCC 63151 | | || | |||| || |||| || | ||| ||| | || ||||| || Sbjct 182599 GTCTTTCTTCCACGGCCTTGCT-TTTCATAATCTTCATATAATTTTCTAAAATCGTCACC 182657 Query 63152 CCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC 63211 |||||||| | | |||| | |||||||| || ||||| | | ||| ||| |||| Sbjct 182658 CCAAACATCTTGAAGTCCACGGCATTCATCAGGGCACATAAGGGTCCAGTCTTGATCATT 182717 Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 | |||| || |||||| | ||| |||| ||| ||||| || ||||| | | ||| Sbjct 182718 TTCAACTCTTTCCATAAATAAATCGGGAACCCATAGAGCAGGGAAAAGATCACGGCATCT 182777 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 ||| || || || ||| ||| | | || | ||| | | || |||| |||||| Sbjct 182778 CATTTCTTCCTTGCCATGATTTTTTCTGATTTCTATGAATTCAACAACATCAACATGCCA 182837 Query 63332 CGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC---TGATCTATGTA 63388 || ||||||||||| || || |||| | | | ||||| || || || || || Sbjct 182838 AGGCTCCAAGTATATTGCAATCGCTCC---CTTTCTCTTTCCCCCACCTTGGTCGATATA 182894 Query 63389 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGT 63448 ||| || || | ||||||||| | | ||||||||| | ||| ||||| | ||||| || Sbjct 182895 TCTTGCAGTATCATTATAAACACGTAGCATTGGAATCAAACCATTTGACCTTCCATTAGT 182954 Query 63449 ACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGC 63508 ||| ||||| ||| | ||||||||||||| | | | ||||| || || || Sbjct 182955 ACCTCTTATATAAGATCCTGTACCACGAATATTACTCACCGCAATACCTAGCCCACCAGC 183014 Query 63509 CATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATC 63568 | |||| || |||||| | | || || ||| |||| || | ||| || || Sbjct 183015 CGTTTTGCTAATATTTGCGCACTTTGTCAAAGTATCAAAGATTCCATTTATCGAGTCCTC 183074 Query 63569 GATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAA 63628 || |||||| ||||| ||||| || ||||| ||| || ||||||||||| Sbjct 183075 CGCAATCCTAAGTAAGAAACAAGAGGACATCTGTGGACGAGGAGTACCTGCATTAAATAA 183134 Query 63629 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGA 63688 || || | || || ||||| | || | || || || | || |||||||| || || Sbjct 183135 AGTCGGCGTGGCATGAGTAAAATACTTCTGTGATAGCAGTTCATAAGTCTCAATTGCCGA 183194 Query 63689 GTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748 |||| ||| | ||| ||||| || || | ||||| || |||||| ||||| || Sbjct 183195 ATCTAAATCACCGCAATGTATTCCGCAAGCAACTCTCATTAGCAAGTGCTGTGGTCTCTC 183254 Query 63749 AACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATA 63808 ||| ||||||| | | | |||| || |||||| | || | |||||| || ||||||| Sbjct 183255 AACTATCTTGTCATCCACTCTCAATAAATAGGATCTCTCAAGAGTTTTGAATGCAAAATA 183314 Query 63809 GTTGTATGAAAAGTCTC 63825 || ||| |||||||| Sbjct 183315 GTCGTACTCAAAGTCTC 183331 >seq141 Length=88262 Score = 212 bits (234), Expect = 8e-50 Identities = 580/863 (67%), Gaps = 34/863 (4%) Strand=Plus/Plus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 |||||| ||| |||| |||||||| || | |||||| |||||||||||||| |||| Sbjct 19847 CATAACACCCGCCATTTGATATTCACCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTG 19906 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 33119 | || || ||||| ||||||| ||||| |||||||| || | ||||| |||| Sbjct 19907 AAGAGAAATCAAATCCATCCAATCAAAAGGATTAGTAACATTGTATA-TTTTTGAAATAT 19965 Query 33120 CAA-TTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33178 ||| || | |||||||| || || ||||| |||||| | |||| | | | ||| Sbjct 19966 CAAGAGCAACTAATAATCTATCAGCTACAAATTCAATATATTGTGTCATAAGTCTAGAAT 20025 Query 33179 TCATTCCTATAAGTTTAACTGG--AAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATAC 33236 |||| || ||||| | || || |||| | || ||| ||| | | ||||| || Sbjct 20026 TCATACCAATAAGATCTACAGGTAAAGAATCACA-TAA-AAAGTTTCTTTCAACATCAAC 20083 Query 33237 CGCATCTGTTATAATAGATCTAACGGTTTCT-TCACTCGGTGGATGCAA--TAAATG-TT 33292 || |||| |||||| | || ||| | | ||| | || ||| || || Sbjct 20084 AGCTTCTGATATAATTTGTTGTAC----TCTAGAAATTGGTAATTTAAATTTAAGTGATT 20139 Query 33293 TAAACATCAAACATGCGAAATC-GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 33351 || | || ||||| || ||||| ||| || | ||| || || | |||||||| ||| || Sbjct 20140 TATAAATTAAACAAGCAAAATCTGCA-TGTAAACCTTCATCACGACTAATTAATTCATTA 20198 Query 33352 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33411 ||||| || || || ||||||| ||||| ||||| | ||||||||| | | ||| Sbjct 20199 GAAAATGTAAGACCAGGCATTAATCCACGTTTTTTTAACCAAAATATAGCACAGAAACTA 20258 Query 33412 CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33471 |||||||| || || ||||| |||||| || |||| | ||| || || || || Sbjct 20259 CCAGAAAATAAAATACCTTCAACTGCACAGAATCCAATTAATCTTTCAGCA-AATGAACG 20317 Query 33472 CT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC----ACAAGGCATCG 33526 | | || ||||| ||| ||||| || || || ||||| || ||| ||| Sbjct 20318 ATCATTATTCATCCATTTTGTTGCCCATTCTGCTTTTTTTTTAACTGCATCAA--CATGA 20375 Query 33527 TTTCTATGGCATTAAAGAGATAGtt-tttttCATTACTATCTTTAACATAAGTATCGATC 33585 | ||| || | ||| | | | || ||| ||| |||| | | ||| ||| || Sbjct 20376 GT--TATAGCTTCAAATA-ACATTTGACGTTCCTTAATATCACTTATATATTGATCTATA 20432 Query 33586 A--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAAC 33643 | || || ||| |||| || || | |||||| ||||| |||||| | || | || Sbjct 20433 AGTAATGA--ATAAGTTTCATTGTGTATTTGTTCAATAGCCATTTGAAATGCATA-ATAC 20489 Query 33644 A-TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACT 33702 | ||| || || ||||| |||| |||| | |||| | | || | |||||| | || Sbjct 20490 ATTCTTGCTTCAGTAATTTGTATTTCTCTTAAAAAATTTACAGCAAGATTTTCCATAACA 20549 Query 33703 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 33762 ||||| ||||| || |||||||| || | |||| ||| ||||||| |||||| | Sbjct 20550 ATTCCATCACTTGCAGCAAAAAATGCAAGAACATATTTAATAAAATGTTTTTCAGGATCT 20609 Query 33763 GTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 33822 ||| | |||||| | || |||| | || ||| | |||||| || |||||| Sbjct 20610 TTTAAACTTCCCCAATCTCTCATGTCTTGACTTAAATCAATTTCTTCAGCTACCCAAAAA 20669 Query 33823 GATGCCTCTGCCTTTTTATACAT 33845 || || || || ||||| ||||| Sbjct 20670 GAAGCTTCAGCTTTTTTGTACAT 20692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946070908200