Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq141 284 3e-71 seq129 145 2e-29 seq93 91.5 4e-13 >seq141 Length=88262 Score = 284 bits (314), Expect = 3e-71 Identities = 587/858 (68%), Gaps = 19/858 (2%) Strand=Plus/Minus Query 22105 TACAAGAAAGCAGAAGCTTCCCTATGGGGTGTTTCCGAAATTGATATT--TCCACTGATA 22162 ||||| ||||| |||||||| | |||| | | ||||||||| | || | || Sbjct 20689 TACAAAAAAGCTGAAGCTTCTTTTTGGGTAGCTGAAGAAATTGATTTAAGTCAAGACATG 20630 Query 22163 AGACGGATTGGCCAAAACTTACAGAAAACGAACAACATTTTATCAAATATATTCTAGCAT 22222 ||| |||||| || | | ||| ||| |||||||||| |||||| |||| |||| Sbjct 20629 AGA--GATTGGGGAAGTTTAAAAGATCCTGAAAAACATTTTATTAAATATGTTCTTGCAT 20572 Query 22223 TCTTTGCTACCGCAGACGGTATAGTTTTTGAGAATCTAGTGACTAATTTTGCATCTGAAA 22282 | |||||| | || || || ||| | || ||||| | |||||| | |||| Sbjct 20571 TTTTTGCTGCAAGTGATGGAATTGTTATGGAAAATCTTGCTGTAAATTTTTTAAGAGAAA 20512 Query 22283 TTCAATACCCAGAGGCCAGA-TGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCAC 22341 | ||| | || || ||| ||| | |||| | |||||| |||||| | | ||| Sbjct 20511 TACAAATTACTGAAGCAAGAATGTAT-TATGCATTTCAAATGGCTATTGAACAAATACAC 20453 Query 22342 GCGGAAACATATTCTATGATGCTACAGTCACTCGTAGAAG--ATAAAGACGAACAACGAA 22399 ||||| ||||| | | || | ||| | || ||| ||| | |||| | || Sbjct 20452 AATGAAACTTATTCATTACTTATAGA-TCAATA-TATAAGTGATATTAAGGAACGTCAAA 20395 Query 22400 ACTTATTCCGCGCGATT-CGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTG 22458 ||||| || || | || || | || |||| || || ||||| ||||| Sbjct 20394 TGTTATTTGAAGCTATAACTCATG-TTGATGCAGTTAAAAAAAAAGCAGAATGGGCAACA 20336 Query 22459 AAATGGATGAACAATGAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTG--GTTG 22516 ||||||||||| ||||| |||||||| || ||| | | |||| ||| ||||| |||| Sbjct 20335 AAATGGATGAATAATGATCGTTCATTTGCTGAAAGATTAATTGGATT--CTGTGCAGTTG 20278 Query 22517 AAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTA 22576 |||| ||||| |||||||| || ||||| || |||||| |||||||||||| | | | Sbjct 20277 AAGGTATTTTATTTTCTGGTAGTTTCTGTGCTATATTTTGGTTAAAAAAACGTGGATTAA 20218 Query 22577 TGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATT 22636 |||| ||||| || ||||| ||||| |||||||| || ||||| ||| | ||| | |||| Sbjct 20217 TGCCTGGTCTTACATTTTCTAATGAATTAATTAGTCGTGATGAAGGTTTACATGCAGATT 20158 Query 22637 TTGCGTGTATGCTATATCGGAATCATATCATTCATAAACTTCCATATGAAACTGTACTTG 22696 |||| ||| | | ||| ||||| | | | |||| | ||| | | |||| Sbjct 20157 TTGCTTGTTTAATTTAT--AAATCACTTAAAT-TTAAATTACCAATTTCTAGAGTACAAC 20101 Query 22697 ATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTAA 22756 | ||||| || | || ||||| ||||| | ||| | || || | ||||| ||| Sbjct 20100 AAATTATATCAGAAGCTGTTGATGTTGAAAGAAACTTTTTATGTGATTCTTTACCTGTAG 20041 Query 22757 GTCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGTC 22816 ||| |||||||| ||| | | |||| ||||||| ||||||| || ||| | Sbjct 20040 ATCTTATTGGTATGAATTCTAGACTTATGACACAATATATTGAATTTGTAGCTGATAGAT 19981 Query 22817 TATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGATGG 22876 ||||| || | || | | | |||| || || || |||||| ||||| ||||||| Sbjct 19980 TATTAGTTGCTCTTGATATTTCAAAAATATACAATGTTACTAATCCTTTTGATTGGATGG 19921 Query 22877 AACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAA 22936 | | ||||| ||| |||| || || ||||| || |||||||||||||||||||| |||| Sbjct 19920 ATTTGATTTCTCTTCAAGGTAAAACTAATTTTTTTGAAAAAAGAGTTGGTGAATATCAAA 19861 Query 22937 AAGCAGGTGTTATGGATG 22954 || |||||||||| || Sbjct 19860 TGGCGGGTGTTATGGTTG 19843 >seq129 Length=387383 Score = 145 bits (160), Expect = 2e-29 Identities = 485/744 (65%), Gaps = 8/744 (1%) Strand=Plus/Minus Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 || ||||| | || ||||| || ||||| | |||||| || || |||||| ||| Sbjct 183260 ATAGTTGAGAGACCACAGCACTTGCTAATGAGAGTTGCTTGCGGAATACATTGCGGTGAT 183201 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC-ACGCACGCCAC 363560 | ||| | || ||||| || ||| | || ||| | ||||| || || ||||| Sbjct 183200 TTAGATTCGGCAATTGAGACTTATGAACTGCTATCA-CAGAAGTATTTTACTCATGCCAC 183142 Query 363561 GCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTT-CTAA 363619 ||| || | | ||||| || |||| | |||||||||||| ||||| |||||| || | Sbjct 183141 GCCGACTTTATTTAATGCAGGTACTCCTCGTCCACAGATGTCCTCTTG-TTTCTTACTTA 183083 Query 363620 AAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTT 363679 || ||| || || || | || |||||||| || | | || || || |||| Sbjct 183082 GGATTGCGGAGGACTCGATAAATGGAATCTTTGATACTTTGACAAAGTGCGCAAATATTA 183023 Query 363680 CCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTAC 363738 ||| | || || || | ||| | || | ||| |||||| |||| | ||| Sbjct 183022 GCAAAACGGCTGGTGGGCTAGGTATTGCGGTGAGTAATATTCGTGGTACAGGATC-TTAT 182964 Query 363739 ATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAAT 363798 || | || || ||| || ||||| || |||| ||||| ||||| | | | || Sbjct 182963 ATAAGAGGTACTAATGGAAGGTCAAATGGTTTGATTCCAATGCTACGTGTTTATAATGAT 182904 Query 363799 ACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTC 363858 ||||| || || ||||||| ||||| |||||| | || || ||| |||| || || | Sbjct 182903 ACTGCAAGATATATCGACCAAGGTGGGGGAAAGAGAAAGGGAGCGATTGCAATATACTTG 182844 Query 363859 GAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAG 363918 |||||| |||| ||| || |||| || | || || | ||||| || || || Sbjct 182843 GAGCCTTGGCATGTTGATGTTGTTGAATTCATAGAAATCAGAAAAAATCATGGCAAGGAA 182784 Query 363919 GAATTGCG-TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCG 363977 ||| || | ||| |||||||| ||| ||| || |||||| | || |||||| | | Sbjct 182783 GAAATGAGATGC-CGTGATCTTTTCCCTGCTCTATGGGTTCCCGATTTATTTATGGAAAG 182725 Query 363978 CGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGA 364037 || || | | | | ||| | || | ||||| | ||||| | || ||| || Sbjct 182724 AGTTGAAAATGATCAAGACTGGACCCTTATGTGCCCTGATGAATGCCGTGGACTTCAAGA 182665 Query 364038 TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCG 364097 ||| ||||||||||| | | |||| ||| | |||||| | | || | | Sbjct 182664 TGTTTGGGGTGACGATTTTAGAAAATTATATGAAGATTATGAAAAGCAAGGCCGTGGAAG 182605 Query 364098 TAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGG 364157 |||||||| ||||||||||| ||||| || | | | || || || || || Sbjct 182604 AAAGACAATGAAGGCACAGAAGCTTTGGTTCCTTATACTCCAAGCTCAAATAGAAACGGG 182545 Query 364158 AACACCCTATATGTTGTACAAAGA 364181 || |||||||| | ||||| || Sbjct 182544 GACTCCCTATATTTGCTACAAGGA 182521 >seq93 Length=13655 Score = 91.5 bits (100), Expect = 4e-13 Identities = 248/372 (67%), Gaps = 12/372 (3%) Strand=Plus/Minus Query 111191 AGAATATCAATATCTTCAGTTGATTTCTAAAGTACTAGAACATGGTGAATATCGAAGTGA 111250 ||||| ||||||| | | || ||||| | ||| ||||| |||| |||| || | Sbjct 4874 AGAATTTCAATATTTAGATTTAATTTCAAGAGTTTTAGAAAATGGATCATATAGAGAAAA 4815 Query 111251 CAGAACGGGCACTGGTACCGTAAGTT---TATTTGGAGAAACAATGCGTTTTAATCTGTC 111307 |||||||| | | ||| || || |||||||| ||| ||||||||| || | Sbjct 4814 TAGAACGGGTATTAATACA-TA--TTCAATATTTGGACAAATGATGCGTTTTGATTTAAG 4758 Query 111308 A-ACTCATTTTCCACTTCTCACAAC--AAAGCGAACATATTGGAAGGGAATTGTCGAAGA 111364 | | |||||| ||| | | ||||| ||| | |||| || | ||| | ||||| Sbjct 4757 AGAATCATTT-CCATTATTAACAACTAAAAAAGTTGCTATTAGA--GCAATATTTGAAGA 4701 Query 111365 ACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAA 111424 | | ||||||||||| || |||||||| ||| | | | |||||| || | Sbjct 4700 ATTAATGTGGTTTATTAAAGGTGATACAAATGGTAATCATTTAATTGAAAAAAAAGTTTA 4641 Query 111425 AATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGA 111484 |||||| |||||||| || || | | |||| | ||||| | | | | || Sbjct 4640 TATTTGGTCAGGAAATGGTTCTAAAGAATATTTAGAAAAAATTGGTTTAGGACATAGAGA 4581 Query 111485 AGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAA 111544 |||| |||| | |||||| | || || ||||||||||| || ||| || ||| || || Sbjct 4580 AGAAAATGATTTAGGACCAATATATGGTTTTCAATGGCGTCATTTTAATGGAGAATATAA 4521 Query 111545 AACCATGCACGA 111556 ||| ||||| || Sbjct 4520 AACAATGCATGA 4509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303351178613390