Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq129 443 3e-119 seq141 250 3e-61 >seq129 Length=387383 Score = 443 bits (490), Expect = 3e-119 Identities = 1198/1819 (66%), Gaps = 42/1819 (2%) Strand=Plus/Plus Query 61889 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG 61948 || || || ||||| || ||||| |||| || |||||||||||| | || || Sbjct 181528 TAATATATCCCCGTCTTAAGACCTTTTTTCCAGCCATAAAAATGCATAGAAGAAAGCTTC 181587 Query 61949 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 62008 | | || ||| || | | ||||| ||||||| ||||||| || || | | ||| Sbjct 181588 GCAAAATTCGCATTTTCCATATGTATATTCAGAGATTGAGACTGGCAAATATAAGGTCCT 181647 Query 62009 CTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AAC 62067 || ||||| ||||| | || | | ||||||| |||||||||| |||||||| || Sbjct 181648 CTATCTGCTGCCATGTCAATTACTGACTTTTGTTTGATTTCCCAAACTGTTTTATATAAA 181707 Query 62068 TCGCTTAATATCTTCTGGAAGG---TTTGTATTCTGAATGGATCCACCATCTGCCATAAT 62124 | | || |||||||||||| | | |||| ||||| || | || || || Sbjct 181708 TTTCGTA-TATCTTCTGGAATACAATCTATATTTTGAATACTGCCGTTGTTAGCAATTAT 181766 Query 62125 CCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGG 62184 | | |||| ||||||||||||| | |||| || | | |||||||| || Sbjct 181767 ATTCTGTTTGAGACGATCATTCCATAATCCTAGCTCGAGCAAGTCATTCAGGAGATGTGG 181826 Query 62185 ATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGG 62244 ||| || | ||| || || || | ||||| ||| |||||||| ||| | || Sbjct 181827 ATTCACGATGAAAAACTCGCCGGATAGAACTCTACGATGATAAATATTTGACGTAAAAGG 181886 Query 62245 TTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 62304 || | | |||||||||||||| || |||| || ||||| || ||||||||||||| Sbjct 181887 CTCGAAACTTTCATTATTTCCCAATATCTGAGAGGTAGATGCTGTGGGCATAGGTGCCAA 181946 Query 62305 CAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCA 62364 ||||| |||||| || || | | ||| || | ||| || | ||||||| || Sbjct 181947 TAATAAGGAATTTCTTAGTCCATGCTTGGAGATCTTTTGTTTAAGTAGGTCCCAATCGCA 182006 Query 62365 AAGATCCGAC---GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTA 62421 || | || ||| ||| ||||| |||||| ||||| || Sbjct 182007 AATTCCTGAGTTAGGTTTAACTCCCCACATGTCAAATTGTAAAATACCTTTACTTGCAGG 182066 Query 62422 CGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAA 62481 || || | || || || || ||||| || || || |||| ||||||||| |||||||| Sbjct 182067 AGAACCCAAGTAGGTTTCATAAGGTCCATCTTTTTCTGCTAATTCACAACTAGCCTCTAA 182126 Query 62482 TGCACCGTAATAAATGGTTTCGAAGATCT-----TCTTATTTAGATCTTGCGCTTCCAGG 62536 ||| ||||||| || | ||| || |||| | | |||| ||| || | ||| Sbjct 182127 GGCAGCGTAATAGATAGATTCAAAAATCTCAACGTTTAATTT---TCTGGCTCCCTCAGA 182183 Query 62537 CTATCAAATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 62595 || | |||| || ||| | || || ||||| | ||||||||||||||| || Sbjct 182184 CT--CGTATGGC-AAGCGAAGCATCATGAAACAATCTGCAAGTCCTTGAACACCAATTCC 182240 Query 62596 GATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATC 62655 | ||||| |||| | || || ||| ||| ||| | | ||| || |||||| Sbjct 182241 TAAAGGTCGATGTTTTAGGTTGGAACTTTTGCTTTCAGGAGTTGAATAGTAGCCAATATC 182300 Query 62656 TATAATTTTATTGAGATTTCTG---ACAATTACTTTGACCACATCCTTCAGTTTGAGAAA 62712 ||||| ||||| | ||||| |||| ||||| || ||||| || ||| ||| Sbjct 182301 AATAATCTTATTCAAGTTTCTAGTTACAAC--CTTTGTT-ACTTCCTTGAGCTTGTCAAA 182357 Query 62713 ATCAAA-----TCGCCCATCTATTA-CAAACATGTTCAATGCAACAGATGCCAGATTACA 62766 |||||| | | | ||| | ||||| || | | ||| ||||||| || || Sbjct 182358 ATCAAAAGTTTTTTTCTCTTTATCAACAAACTTGGGAAGTCCAATGGATGCCAAGTTGCA 182417 Query 62767 AACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTT 62826 || || | ||||| || | ||| | ||| ||||| || || || |||||| | Sbjct 182418 GACAGCAATTTCATTTGCGCTAGTATACTCTATAATCTCTGTACAGAGGTTACTAGAAAC 182477 Query 62827 GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 62886 ||||| |||||||||| |||||||| |||| ||| || ||||| || ||| | Sbjct 182478 AATGGTGCCTAAATTTTTCTGATTACTTTTTTGATTAGCGGCGTCCTTGTAGCAAATATA 182537 Query 62887 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA 62945 ||||| || ||||| || |||| || | || ||| | | || | ||||| | Sbjct 182538 GGGAGTCCCCGTTTCTATTTGAGCTTGGAGTATAAGGAACCAAA-GCTTCTGTGCCTTCA 182596 Query 62946 TTATAGAT-TTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCT 63004 || | | || | | || || |||| || | ||| ||| | || ||||| Sbjct 182597 TTGTCTTTCTTCCACGGCCTTGCT-TTTCATAATCTTCATATAATTTTCTAAAATCGTCA 182655 Query 63005 CCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCA 63064 |||||||||| | |||||| | |||||||| || ||||| | | ||| ||| ||| Sbjct 182656 CCCCAAACATCTTGAAGTCCACGGCATTCATCAGGGCACATAAGGGTCCAGTCTTGATCA 182715 Query 63065 TCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTT 63124 | | |||| || |||||| | ||| |||| ||| ||||| || ||||| | | | Sbjct 182716 TTTTCAACTCTTTCCATAAATAAATCGGGAACCCATAGAGCAGGGAAAAGATCACGGCAT 182775 Query 63125 CTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGC 63184 || ||| || || || ||| ||| | | || | ||| | | || |||| |||| Sbjct 182776 CTCATTTCTTCCTTGCCATGATTTTTTCTGATTTCTATGAATTCAACAACATCAACATGC 182835 Query 63185 CACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC---TGATCTATG 63241 || || ||||||||||| || || |||| | | | ||||| || || || || Sbjct 182836 CAAGGCTCCAAGTATATTGCAATCGCTCC---CTTTCTCTTTCCCCCACCTTGGTCGATA 182892 Query 63242 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTG 63301 ||||| || || | ||||||||| | | ||||||||| | |||||| || | ||||| Sbjct 182893 TATCTTGCAGTATCATTATAAACACGTAGCATTGGAATCAAACCATTTGACCTTCCATTA 182952 Query 63302 GTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCT 63361 || ||| ||||| ||| | ||||||||||||| | | | ||||| || || Sbjct 182953 GTACCTCTTATATAAGATCCTGTACCACGAATATTACTCACCGCAATACCTAGCCCACCA 183012 Query 63362 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 63421 ||| |||| || |||||| | | || |||||| |||| || | ||| || Sbjct 183013 GCCGTTTTGCTAATATTTGCGCACTTTGTCAAAGTATCAAAGATTCCATTTATCGAGTCC 183072 Query 63422 TCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 63481 ||| || |||||| ||||| ||||| || ||||| ||| || ||||||||| Sbjct 183073 TCCGCAATCCTAAGTAAGAAACAAGAGGACATCTGTGGACGAGGAGTACCTGCATTAAAT 183132 Query 63482 AAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT 63541 || || || | || |||||||| | || | || || || | || |||||||| || Sbjct 183133 AAAGTCGGCGTGGCATGAGTAAAATACTTCTGTGATAGCAGTTCATAAGTCTCAATTGCC 183192 Query 63542 GAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 63601 || |||| ||| | ||| ||||| || || | ||||| || |||||| ||||| Sbjct 183193 GAATCTAAATCACCGCAATGTATTCCGCAAGCAACTCTCATTAGCAAGTGCTGTGGTCTC 183252 Query 63602 TCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 63661 ||||| ||||||| | | | |||| || |||||| | || | |||||| || ||||| Sbjct 183253 TCAACTATCTTGTCATCCACTCTCAATAAATAGGATCTCTCAAGAGTTTTGAATGCAAAA 183312 Query 63662 TAGTTGTATGAAAAGTCTC 63680 |||| ||| |||||||| Sbjct 183313 TAGTCGTACTCAAAGTCTC 183331 >seq141 Length=88262 Score = 250 bits (276), Expect = 3e-61 Identities = 588/862 (68%), Gaps = 32/862 (4%) Strand=Plus/Plus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 |||||| ||| |||| |||||||| || | |||||| ||||||||||||||||||| Sbjct 19847 CATAACACCCGCCATTTGATATTCACCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTG 19906 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCC 32476 | || || ||||| |||| || ||||| |||||||| || | ||||| |||| Sbjct 19907 AAGAGAAATCAAATCCATCCAATCAAAAGGATTAGTAACATTGTATA-TTTTTGAAATAT 19965 Query 32477 CAA-TTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAAT 32535 ||| || | |||||||| || |||||||| |||||| | |||| | | | ||| Sbjct 19966 CAAGAGCAACTAATAATCTATCAGCTACAAATTCAATATATTGTGTCATAAGTCTAGAAT 20025 Query 32536 TCATTCCTATAAGTTTAACTGG--AAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 32593 |||| || ||||| | || || |||| |||| ||| ||| | | ||||| | || Sbjct 20026 TCATACCAATAAGATCTACAGGTAAAGAATCACA-TAA-AAAGTTTCTTTCAACATCAAC 20083 Query 32594 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAA--TAAATG-TTT 32650 || |||| |||||| | |||| | | | ||| | || ||| || ||| Sbjct 20084 AGCTTCTGATATAATTTGTTGTACTCT---AGAAATTGGTAATTTAAATTTAAGTGATTT 20140 Query 32651 AAACATCAAACATGCGAAATC-GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 32709 | | || ||||| || ||||| ||| |||| ||| || || | |||||||||||| || | Sbjct 20141 ATAAATTAAACAAGCAAAATCTGCA-TGTAAACCTTCATCACGACTAATTAATTCATTAG 20199 Query 32710 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT-GGACGCAAATGAT 32768 |||| || || || ||||||| ||||| ||||| | ||||||||| | || ||| | Sbjct 20200 AAAATGTAAGACCAGGCATTAATCCACGTTTTTTTAACCAAAATATAGCACAGAAACTA- 20258 Query 32769 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 32828 |||||||| ||||| ||||| ||||| || |||| | ||| || || || || Sbjct 20259 CCAGAAAATAAAATACCTTCAACTGCACAGAATCCAATTAATCTTTCAGCA-AATGAACG 20317 Query 32829 CT-GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC----ACAAGGCATTG 32883 | | || ||||| ||| ||||| || || || ||||| || ||| || || Sbjct 20318 ATCATTATTCATCCATTTTGTTGCCCATTCTGCTTTTTTTTTAACTGCATCAA--CA-TG 20374 Query 32884 TCTCTATAGCATTAAAGAGATAGtt-tttttCATTACTATCTTTAACATATGTATCAATC 32942 | |||||| | ||| | | | || ||| ||| |||| | | |||| ||| || Sbjct 20375 AGT-TATAGCTTCAAATA-ACATTTGACGTTCCTTAATATCACTTATATATTGATCTATA 20432 Query 32943 A--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGC 33000 | || || ||| |||| || || | |||||| |||||||||||| | || | Sbjct 20433 AGTAATGA--ATAAGTTTCATTGTGTATTTGTTCAATAGCCATTTGAAATGCATAATACA 20490 Query 33001 ATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTA 33060 ||| || || ||||| |||| |||| | |||| | | || | |||||| | || | Sbjct 20491 TTCTTGCTTCAGTAATTTGTATTTCTCTTAAAAAATTTACAGCAAGATTTTCCATAACAA 20550 Query 33061 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG 33120 |||| ||||| || |||||||| || | |||| ||| ||||||| |||||| | Sbjct 20551 TTCCATCACTTGCAGCAAAAAATGCAAGAACATATTTAATAAAATGTTTTTCAGGATCTT 20610 Query 33121 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 33180 ||| | |||||| | || |||| | || ||| | |||||| || |||||| | Sbjct 20611 TTAAACTTCCCCAATCTCTCATGTCTTGACTTAAATCAATTTCTTCAGCTACCCAAAAAG 20670 Query 33181 ATGCCTCTGCCTTTTTATACAT 33202 | || || || ||||| ||||| Sbjct 20671 AAGCTTCAGCTTTTTTGTACAT 20692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633630851542000