Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq141 219 5e-52 >seq141 Length=88262 Score = 219 bits (242), Expect = 5e-52 Identities = 591/883 (67%), Gaps = 26/883 (3%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||||| |||| ||||| |||||| |||||||||| ||||| || || |||| Sbjct 19847 CATAACACCCGCCATTTGATATTCACCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTG 19906 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 | ||| ||| ||| || | | | ||||| | | || || || |||| | || Sbjct 19907 AAGAGAAATCAAATCCATCCAATCAAAAGGATTAGTAACATTGTA-TATTTTTGAAATAT 19965 Query 92908 CAACTCGTAC-AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATC-ACAA 92965 ||| || ||||||||||||||||||||||| || || || | ||| || || | || Sbjct 19966 CAAGAGCAACTAATAATCTATCAGCTACAAATTCAATATATTGTGTCAT-AAGTCTAGAA 20024 Query 92966 TTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACG 93025 ||||| || | |||| |||||||| || || || || | | | || | |||| Sbjct 20025 TTCATACCAATAAGATCTACAGGTAAAGAATCACATAAAAAGTTTCTTTCAACATCAACA 20084 Query 93026 GCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTT--TGTACGACATAATTGT 93083 |||||| | |||| | ||||||| | ||||| ||| | || | || || | Sbjct 20085 GCTTCTGATATAATTTGTTGTACTCTAGAAATTGGTAATTTAAATTTAAGTGAT--TTAT 20142 Query 93084 ACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGA 93143 | ||||| || ||||| || | |||||||||||| || || || || ||||| | Sbjct 20143 AAATTAAACAAGCAAAATCTGCATGTAAACCTTCATCACGACTAATTAATTCATTAGAAA 20202 Query 93144 ATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAG 93203 |||| | ||| || | | ||| ||||| || | ||||||||| | | |||||||||| Sbjct 20203 ATGTAAGACCAGGCATTAATCCACGTTTTTTTAACCAAAATATAGCACAGAAACTACCAG 20262 Query 93204 aaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAAT 93263 |||| || |||||||| || || ||| | | | | ||| ||||| || || Sbjct 20263 AAAATAAAATACCTTCAACTGCACAGAATCCAATTAATCTTTCAGCAAA---TGAACGAT 20319 Query 93264 TACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAA-TACA--AGGTAGTGTTT 93320 | | | ||||||||| ||||| || |||||||| |||| | || | | ||| Sbjct 20320 CATTATTCATCCATTTTGTTGCCCATTCTGCTTTTTTTTTAACTGCATCAACATGAGTT- 20378 Query 93321 CGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380 ||||| | ||||| | || || | ||| | ||| ||| ||| || | | Sbjct 20379 --ATAGCTTCAAATAACATTTGACGTTCCTTAATATCACTTATATATTGATCTATAAGTA 20436 Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA-TCTA 93439 ||||| ||||| || | | || || || ||||| ||| | || | ||| ||| Sbjct 20437 ATGAATAAGTTTCATTGTGTATTTGTTCAATAGCCATTTGAAATGCATA-ATACATTCTT 20495 Query 93440 GCTTCCGTGATCTGCACTTCT-TGAGAAAATCTCTCTACGAGATTTTCATTGACTATACC 93498 ||||| || || || | |||| | | ||||| | | | |||||||| | || || || Sbjct 20496 GCTTCAGTAATTTGTATTTCTCTTAAAAAAT-TTACAGCAAGATTTTCCATAACAATTCC 20554 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC-TTTAA 93557 ||| ||| |||||||| || | | || || ||||||||||| ||| ||| ||||| Sbjct 20555 ATCACTTGCAGCAAAAAATGCAAGAACATATTTAATAAAATGTTTTTCAGGATCTTTTAA 20614 Query 93558 GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 ||| ||||||| | |||| | ||| | |||||| | |||||| || | Sbjct 20615 ACTT-CCCCAATCTCTCATGTCTTGACTTAAATCAATTTCTTCAGCTACCCAAAAAGAAG 20673 Query 93618 CTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAAT 93660 |||| |||||||||||||| ||| || |||| | ||| ||| Sbjct 20674 CTTCAGCTTTTTTGTACATTGACCAAATTTCTTTA-ATTAAAT 20715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859790689800