Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq130 123 6e-23 seq120 122 2e-22 >seq130 Length=374773 Score = 123 bits (136), Expect = 6e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| ||||| ||||| | || ||| || || ||||||||||| | Sbjct 265136 CCACCTCTAAGTCTCAGTACTAGATGTAAGGTAGATTCCTTCTGAATATTATAGTCCGAA 265077 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || ||||| |||||||| || || ||||||| |||||||||| | || Sbjct 265076 AGAGTTCTGCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGA 265017 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || || ||||| || || ||||| || ||||| |||| ||| | || || Sbjct 265016 ATTCCCTCCTTGTCCTGAATCTTAGCTTTGACATTTTCAATAGTATCAGAGGGCTCGACC 264957 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | || || ||||| || || || || || || || ||||||||| Sbjct 264956 TCCAAAGTAATGGTCTTGCCTGTTAGTGTTTTTACAAAGATCTGCATT 264909 >seq120 Length=60016 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || |||||||| || | | || || || ||||| |||||||||||||| || Sbjct 31829 TTCTTTCTGAATATTATAATCAGATAAAGTACGACCATCTTCCAATTGTTTTCCTGCAAA 31770 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | ||| |||||| | || || ||||| ||||| || ||||| ||||| || || Sbjct 31769 TATTAAACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGAATTTTTGCTTTAACATT 31710 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| | ||||||||| | || || ||||| || || |||||||| || Sbjct 31709 TTCAATTGTATCTGATGGTTCTACTTCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAAC 31650 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 31649 AAAAATTTGCAT 31638 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || |||||||| || | | || || || ||||| |||||||||||||| || Sbjct 32057 TTCTTTCTGAATATTATAATCAGATAAAGTACGACCATCTTCCAATTGTTTTCCTGCAAA 31998 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | ||| |||||| | || || ||||| ||||| || ||||| ||||| || || Sbjct 31997 TATTAAACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGAATTTTTGCTTTAACATT 31938 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| | ||||||||| | || || ||||| || || |||||||| || Sbjct 31937 TTCAATTGTATCTGATGGTTCTACTTCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAAC 31878 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 31877 AAAAATTTGCAT 31866 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || |||||||| || | | || || || ||||| |||||||||||||| || Sbjct 32285 TTCTTTCTGAATATTATAATCAGATAAAGTACGACCATCTTCCAATTGTTTTCCTGCAAA 32226 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | ||| |||||| | || || ||||| ||||| || ||||| ||||| || || Sbjct 32225 TATTAAACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGAATTTTTGCTTTAACATT 32166 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| | ||||||||| | || || ||||| || || |||||||| || Sbjct 32165 TTCAATTGTATCTGATGGTTCTACTTCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAAC 32106 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 32105 AAAAATTTGCAT 32094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652208423310