Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq120 93.3 4e-14 seq130 86.0 6e-12 >seq120 Length=60016 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||| | || |||||||| ||||| || ||||| | | || || | ||||| Sbjct 31846 ACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCAGATAAAGTACGACCATCTTCC 31787 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 | || || || ||| | || | || || || || |||||||| ||||| || ||||| Sbjct 31786 AATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGA 31727 Query 64355 ATTTTTTGCTTTA-CAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 |||||| |||||| || || | |||||| | || ||||||| || | ||||| Sbjct 31726 ATTTTT-GCTTTAACATTTTCAATTGTATCTGATGGTTCTACTTCTAATGTAATAGTCTT 31668 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | ||| || || ||||||||||| Sbjct 31667 TCCTGTAAGAGTCTTAACAAAAATTTGCAT 31638 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||| | || |||||||| ||||| || ||||| | | || || | ||||| Sbjct 32074 ACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCAGATAAAGTACGACCATCTTCC 32015 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 | || || || ||| | || | || || || || |||||||| ||||| || ||||| Sbjct 32014 AATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGA 31955 Query 64355 ATTTTTTGCTTTA-CAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 |||||| |||||| || || | |||||| | || ||||||| || | ||||| Sbjct 31954 ATTTTT-GCTTTAACATTTTCAATTGTATCTGATGGTTCTACTTCTAATGTAATAGTCTT 31896 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | ||| || || ||||||||||| Sbjct 31895 TCCTGTAAGAGTCTTAACAAAAATTTGCAT 31866 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| ||||| || ||||| | | || || | ||||| | || || || Sbjct 32290 GTGGATTCTTTCTGAATATTATAATCAGATAAAGTACGACCATCTTCCAATTGTTTTCCT 32231 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || || || || |||||||| ||||| || ||||| |||||| ||||| Sbjct 32230 GCAAATATTAAACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGAATTTTT-GCTTT 32172 Query 64367 A-CAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 | || || | |||||| | || ||||||| || | ||||| || || | ||| Sbjct 32171 AACATTTTCAATTGTATCTGATGGTTCTACTTCTAATGTAATAGTCTTTCCTGTAAGAGT 32112 Query 64426 TTTTACGAAAATTTGCAT 64443 || || ||||||||||| Sbjct 32111 CTTAACAAAAATTTGCAT 32094 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/219 (70%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||| | || |||||||| ||||| || ||||| | | || || | ||||| Sbjct 31618 ACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCAGATAAAGTACGACCATCTTCC 31559 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 | || || || ||| | || | || || || || |||||||| ||||| || ||||| Sbjct 31558 AATTGTTTCCCTGCAAATATTAAACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGA 31499 Query 64355 ATTTTTTGCTTTA-CAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 |||||| |||||| || || | |||||| | ||||| |||| || | || || Sbjct 31498 ATTTTT-GCTTTAACATTTTCAATTGTATCTGATGGTTCCACCTCTAATGTGATAGTTTT 31440 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT-TTTAATAA 64451 || || | || || || ||||||||||| ||||||| Sbjct 31439 CCCTGTAAGTGTCTTAACAAAAATTTGCATCCTTAATAA 31401 >seq130 Length=374773 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| || |||||||| | || ||||| || ||||| || || || | | || | | Sbjct 265125 TCTCAGTACTAGATGTAAGGTAGATTCCTTCTGAATATTATAGTCCGAAAGAGTTCTGCC 265066 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| | || || || ||| | || | ||||| || || ||||||||||| || || Sbjct 265065 ATCTTCCAATTGTTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATTCCCTCCTT 265006 Query 64348 TTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTA 64406 || || | | || ||||| ||| || | |||||| || || || || | ||| | Sbjct 265005 GTCCTG-AATCTTAGCTTTGACATTTTCAATAGTATCAGAGGGCTCGACCTCCAAAGTAA 264947 Query 64407 CGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTT 64445 ||||||||| || | |||||||| || || ||||||| Sbjct 264946 TGGTCTTGCCTGTTAGTGTTTTTACAAAGATCTGCATTT 264908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499643894393800