Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq120 102 2e-16 seq130 93.3 1e-13 >seq120 Length=60016 Score = 102 bits (112), Expect = 2e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || ||| | |||||| | || | ||| || || || || | || || |||| ||||| Sbjct 32315 TCTAAGACGCAGGACCAAATGTAAAGTGGATTCTTTCTGAATATTATAATCAGATAAAGT 32256 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||| || ||||| || || || | ||| || || || ||| ||| || Sbjct 32255 ACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGAGGAATACC 32196 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCA-CGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 ||| || ||||| |||||||| | | ||| | || |||| || |||||| || | Sbjct 32195 TTCCTTATCTTGAAT-TTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCTACTTCTA 32137 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || || ||||| || || ||||| || ||||||||||| Sbjct 32136 ATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTG 32097 Score = 95.1 bits (104), Expect = 3e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 ||| || || || || | || || |||| ||||| | |||||||||| || ||||| Sbjct 31835 AGTAGATTCTTTCTGAATATTATAATCAGATAAAGTACGACCATCTTCCAATTGTTTTCC 31776 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT 199551 || || || | ||| || || || ||| ||| ||||| || ||||| |||||||| Sbjct 31775 TGCAAATATTAAACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGAAT-TTTTGCTT 31717 Query 199552 CA-CGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAG 199610 | | ||| | || |||| || |||||| || || || || ||||| || || |||| Sbjct 31716 TAACATTTTCAATTGTATCTGATGGTTCTACTTCTAATGTAATAGTCTTTCCTGTAAGAG 31657 Query 199611 TTTTCACAAAAATTTG 199626 | || ||||||||||| Sbjct 31656 TCTTAACAAAAATTTG 31641 Score = 95.1 bits (104), Expect = 3e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 ||| || || || || | || || |||| ||||| | |||||||||| || ||||| Sbjct 32063 AGTAGATTCTTTCTGAATATTATAATCAGATAAAGTACGACCATCTTCCAATTGTTTTCC 32004 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT 199551 || || || | ||| || || || ||| ||| ||||| || ||||| |||||||| Sbjct 32003 TGCAAATATTAAACGTTGTTGATCAGGAGGAATACCTTCCTTATCTTGAAT-TTTTGCTT 31945 Query 199552 CA-CGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAG 199610 | | ||| | || |||| || |||||| || || || || ||||| || || |||| Sbjct 31944 TAACATTTTCAATTGTATCTGATGGTTCTACTTCTAATGTAATAGTCTTTCCTGTAAGAG 31885 Query 199611 TTTTCACAAAAATTTG 199626 | || ||||||||||| Sbjct 31884 TCTTAACAAAAATTTG 31869 >seq130 Length=374773 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || ||||||||| || || || | || || ||||| || | || ||||| | | ||| Sbjct 265131 TCTAAGTCTCAGTACTAGATGTAAGGTAGATTCCTTCTGAATATTATAGTCCGAAAGAGT 265072 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || |||||||||| || || || || ||||| | |||||| || || ||| |||||| Sbjct 265071 TCTGCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATTCC 265012 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||||||||| || || ||| | || || | | || || ||||| Sbjct 265011 CTCCTTGTCCTGAATCTTAGCTTTGACATTTTCAATAGTATCAGAGGGCTCGACCTCCAA 264952 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || ||||| ||||| || || Sbjct 264951 AGTAATGGTCTTGCCTGTTAGTGTTTTTACAAAGATCTG 264913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178919409784715