Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq116 87.8 2e-12 seq77 84.2 3e-11 >seq116 Length=44781 Score = 87.8 bits (96), Expect = 2e-12 Identities = 174/255 (68%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 126939 AGTAAAATTTTTATAGGTCCAACATACTATCATCGTCTTAAACATATGGTTAAAGATAAA 126998 ||| | |||||| |||| |||| | ||||| ||||||||||||||| ||||||| Sbjct 19872 AGTTATATTTTTGTAGGACCAATTTTTTATCAAAAACTTAAACATATGGTTTTAGATAAA 19813 Query 126999 ATGCATGCTAGAAGTCATGGTCAAGTAACAACATTACATCGTCAACCAAACTG-TGGTCG 127057 |||||||||||| || || | | || |||| | ||||| |||| ||| | Sbjct 19812 ATGCATGCTAGAGGTAGAGGACCTAGACAAATATTAACAAGACAACC-TACTGAAGGTAG 19754 Query 127058 TTCCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTATTTTGGTTCATGG 127117 || ||| |||||| | ||| |||| |||||||||| ||||||| | | | |||| Sbjct 19753 ATCTAAAGATGGTGGTCTTAGACTTGGTGAAATGGAAAGAGATTGTTTAGTTGCATATGG 19694 Query 127118 AGCCACACAATTTTTAAATGAAAGAATGTTTTTATGTTCAGATCCTTTTCAAATTGATGT 127177 ||| | | || |||| ||||| | | | ||||||| ||| ||| |||| Sbjct 19693 AGCAAGTAATTTATTAATAGAAAGGTTAATGCTCAATTCAGATGTATTTGAAACAAATGT 19634 Query 127178 GTGTACAAATTGTGG 127192 |||| || ||||| Sbjct 19633 ATGTAACAAATGTGG 19619 >seq77 Length=115320 Score = 84.2 bits (92), Expect = 3e-11 Identities = 165/244 (68%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 126905 AATGTATTGTGGTTTTACTGGAAGAAGGATAAAGAGTAAAATTTTTATAGGTCCAACATA 126964 ||||||| ||| |||||||| |||| || || | ||||||||| || || || || Sbjct 77129 AATGTATAATGGACATACTGGAAAAAGGCTAGAGTCCAGAATTTTTATTGGACCTACCTA 77188 Query 126965 CTATCATCGTCTTAAACATATGGTTAAAGATAAAATGCATGCTAGAAGTCATGGTCAAGT 127024 ||||| | | ||||| ||||| | |||||||| ||||||||| | ||| ||| Sbjct 77189 TTATCAGAGATTAAAACACATGGTCGATGATAAAATTCATGCTAGAGCTAGAGGTGCAGT 77248 Query 127025 AACAACATTACATCGTCAACCAAACTGTGGTCGTTCCCAAGGTGGTGGATTAAGATTTGG 127084 |||| ||| | ||||| | || ||| | || || || | |||||||| Sbjct 77249 TACAATGTTAACAAGGCAACCTAGAGAGGGACGTGCAAGAGAAGGAGGTCTTAGATTTGG 77308 Query 127085 AGAAATGGAAAAAGATTGTATTTTGGTTCATGGAGCCACACAATTTTTAAATGAAAGAAT 127144 |||||||||| |||||||| | ||| || || || || | | || |||||| | Sbjct 77309 AGAAATGGAACGTGATTGTATGATTTCTCACGGTGCAGCAAAAATGCTTAAAGAAAGACT 77368 Query 127145 GTTT 127148 ||| Sbjct 77369 TTTT 77372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658402006644200