Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq129 381 7e-101 seq141 342 6e-89 >seq129 Length=387383 Score = 381 bits (422), Expect = 7e-101 Identities = 1230/1911 (64%), Gaps = 58/1911 (3%) Strand=Plus/Plus Query 46977 TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTC 47036 || ||||| || | ||| || || | || || ||||| ||| ||||| || || ||| Sbjct 181483 TCTACAGTGAATTGAATAGGCCTAGTGGCACTTTGTGTTCTTAAGTAATATATCCCCGTC 181542 Query 47037 TTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCT 47096 || | |||| |||| ||||| ||||||||| || | || | | || | | | | Sbjct 181543 TTAAGACCTTTTTTCCAGCCATAAAAATGCATAGAAGAAAGCTTCGCAAAATTCGCATTT 181602 Query 47097 GAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATA 47156 ||||| ||||| ||||||||| ||| |||| | | |||||||| |||||||| Sbjct 181603 TCCATATGTATATTCAGAGATTGAGACTGGCAAATATAAGGTCCTCTATCTGCTGCCATG 181662 Query 47157 TCTAAAATAAC---CCTTTGTGGTATCTCCCATACTGTTT--TATAAATTTGTTTAATGT 47211 || ||| || | ||||| || ||||| ||||||| ||||||||| | || | Sbjct 181663 TC---AATTACTGACTTTTGTTTGATTTCCCAAACTGTTTTATATAAATTTCGT--ATAT 181717 Query 47212 CTTCTGGGA---GATTAGTATTTTGAATAGATCCTCCgttttctataattttgtttttta 47268 ||||||| | || ||||||||||| || ||| | || || || | ||| | Sbjct 181718 CTTCTGGAATACAATCTATATTTTGAATACTGCCGTTGTTAGCAATTATATTCTGTTTGA 181777 Query 47269 ---attcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAA 47325 ||||| ||| | | | | || || || | ||||| ||||| || | Sbjct 181778 GACGATCATT---CCATAATCCTAGCTCGAGCAAGTCATTCAGGAGATGTGGATTCACGA 181834 Query 47326 TTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAG 47385 | ||| || || ||||| |||||||| ||| ||||| ||| | || || | | Sbjct 181835 TGAAAAACTCGCCGGATAGAACTCTACGATGATAAATATTTGACGTAAAAGGCTCGAAAC 181894 Query 47386 ATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGC 47445 |||||||||||| || || |||| || |||||||| ||||| | ||| | ||||||| Sbjct 181895 TTTCATTATTTCCCAATATCTGAGAGGTAGATGCTGTGGGCATAGGTGCCAATAATAAGG 181954 Query 47446 TATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTG 47505 |||||||| ||||| || |||| | | |||||| |||| ||| Sbjct 181955 AATTTCTTAGTCCATGCTTGGAGATCTTTTGTTTAAGTAGGTCCCAATCGCAAATTCCTG 182014 Query 47506 A---TGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCAT 47562 | || ||| ||| | ||| |||| | ||| ||||||||| |||||||| Sbjct 182015 AGTTAGGTTTAACTCCCCACATGTCAAATTGTAAAATACCTTTACTTGCAGGAGAACCCA 182074 Query 47563 TATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTAT 47622 || |||| |||||| || | | || || | ||||||||| || || || ||| | Sbjct 182075 AGTAGGTTTCATAAGGTCCATCTTTTTCTGCTAATTCACAACTAGCCTCTAAGGCAGCGT 182134 Query 47623 AATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGAT 47682 |||| || | |||||| || | | ||||| || || ||| | || || | || Sbjct 182135 AATAGATAGATTCAAAAATCTCAACGTTTAATTTTCTGGCTCCCTCAGACTCGTATGGCA 182194 Query 47683 ANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAG 47742 | || |||||| | ||||||||||||||| || | |||| || | Sbjct 182195 AGCGAAGCATCATGAAACAATCTGCAAGTCCTTGAACACCAATTCCTAAAGGTCGAT--G 182252 Query 47743 TTTTA--TTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATT 47800 ||||| || ||| | ||| || || ||| | | ||||| ||||| ||||| Sbjct 182253 TTTTAGGTTGGAACTTTTGCTTTCAGGAGTTGAATAGTAGCCAATATCAATAATCTTATT 182312 Query 47801 TAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAA-----CTTG 47855 | | ||| | | || | ||||||||| || Sbjct 182313 CAAGTTTCTAGTTACAACCTTTGTTACTTCCTTGAGCTTGTCAAAATCAAAAGTTTTTTT 182372 Query 47856 TTATTTAT-AACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATT 47914 | ||||| ||||||| | |||| | || ||||| | || || ||||| | ||||| Sbjct 182373 CTCTTTATCAACAAACTTGGGAAGTCCAATGGATGCCAAGTTGCAGACAGCAATTTCATT 182432 Query 47915 TGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATT 47974 || ||||||| | ||| || || | ||| || |||| | | || || || ||||| Sbjct 182433 TGCGCTAGTATACTCTATAATCTCTGTACAGAGGTTACTAGAAACAATGGTGCCTAAATT 182492 Query 47975 TTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTC 48034 || |||||| | | ||| ||||||||||| ||| | || || || ||||| Sbjct 182493 TTTCTGATTACTTTTTTGATTAGCGGCGTCCTTGTAGCAAATATAGGGAGTCCCCGTTTC 182552 Query 48035 TATCTGAGATTCAATGATAGATTTCCAAA---------CAGTCCTAGCCTTTATAACA-G 48084 ||| |||| || | ||| ||||| | || | | |||| | || | Sbjct 182553 TATTTGAGCTTGGAGTATAAGGAACCAAAGCTTCTGTGCCTTCATTGTCTTTCTTCCACG 182612 Query 48085 CTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACA 48144 || ||||| | || || ||| |||||| || ||| || || || | | Sbjct 182613 GCCTTGCTTT-TCATAATCTTC---------ATATAATTTTCTAAAATCGTCACCCCAAA 182662 Query 48145 CATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTA 48204 ||| | | ||| | ||||||| ||| ||||| | | ||| || | |||||||| | Sbjct 182663 CATCTTGAAGTCCACGGCATTCATCAGGGCACATAAGGGTCCAGTCTTGATCATTTTCAA 182722 Query 48205 CTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTT 48264 |||| |||||||| ||| || | ||| ||||| || | ||| | ||| | || Sbjct 182723 CTCTTTCCATAAATAAATCGGGAACCCATAGAGCAGGGAAAAGATCACGGCATCTCATTT 182782 Query 48265 CTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTT 48324 |||| |||||| ||| || | | ||| | || || | | |||| ||||||| || | Sbjct 182783 CTTCCTTGCCATGATTTTTTCTGATTTCTATGAATTCAACAACATCAACATGCCAAGGCT 182842 Query 48325 CTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAG 48384 | || |||||||| || | || || || || ||||| || |||||||| |||| Sbjct 182843 CCAAGTATATTGCAATCGCTCCCTTTCTCTTTCCCCCACCTTGGTCGATATATCTTGCAG 182902 Query 48385 TATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAA 48444 ||| |||||||| | || |||||| | | ||||||||| | ||||| || || | Sbjct 182903 TATCATTATAAACACGTAGCATTGGAATCAAACCATTTGACCTTCCATTAGTACCTCTTA 182962 Query 48445 TATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTT-- 48502 ||||| ||| || | | |||||||| | | |||||||| ||||| ||| |||| Sbjct 182963 TATAAGATCCTGTACCACGAATATTACTCACCGCAATACCTAGCCCACCAGCCGTTTTGC 183022 Query 48503 AGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCAT 48562 ||||| | |||| || || |||||| | ||||| | ||| || || || Sbjct 183023 TAATATTTGCGCACTTTGTCAAA--GTATCAAAGATTCCATTTATCGAGTCCTCCGCAAT 183080 Query 48563 ATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGG 48622 | | || |||||| ||||| || ||| || ||| |||| ||||||||| || || Sbjct 183081 CCTAAGTAAGAAACAAGAGGACATCTGTGGACGAGGAGTACCTGCATTAAATAAAGTCGG 183140 Query 48623 AGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTAT 48682 | |||||| |||| | |||| ||||| || || ||| || ||||| | ||||||| Sbjct 183141 CGTGGCATGAGTAAAATACTTCTGTGATAGCAGTTCATAAGTCTCAATTGCCGAATCTAA 183200 Query 48683 ATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAAT 48742 ||| | |||||| || || || | ||||| || | || ||||| ||||| || Sbjct 183201 ATCACCGCAATGTATTCCGCAAGCAACTCTCATTAGCAAGTGCTGTGGTCTCTCAACTAT 183260 Query 48743 TTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA 48802 |||| || | | |||| | ||| ||| | || | ||||| || ||||||||| ||| Sbjct 183261 CTTGTCATCCACTCTCAATAAATAGGATCTCTCAAGAGTTTTGAATGCAAAATAGTCGTA 183320 Query 48803 TGAAAAGTCGTTATCATTAATAATTGAT-GAATTTATTCTTTCCTTATGTT 48852 |||||| || | ||| | | || ||||||||| | || ||| || Sbjct 183321 CTCAAAGTCTCTA-GAAAAATCAATAATAGAATTTATTTTCTCTCTATTTT 183370 >seq141 Length=88262 Score = 342 bits (378), Expect = 6e-89 Identities = 589/845 (70%), Gaps = 23/845 (3%) Strand=Plus/Plus Query 18671 TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 |||||||||| |||||||||||||||| ||||||||||| || | | || || | | Sbjct 19861 TTTGATATTCACCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTGAAGAGAAATCAAAT 19920 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTA 18790 |||| ||||||| ||||| | ||||| ||||||||| | | | | | || || Sbjct 19921 CCATCCAATCAAAAGGATTAGTAACATTGTATATTTTTGAAATATCAAGAGCAACTAATA 19980 Query 18791 GTCTATCCGCTACAAATTTAATATATGTGT-TCATCATATCACAATTCATTCCTATTAAT 18849 |||||| |||||||||| ||||||| ||| |||| | | ||||||| || || | Sbjct 19981 ATCTATCAGCTACAAATTCAATATAT-TGTGTCATAAGTCTAGAATTCATACCAATAAGA 20039 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 | ||||||| | ||| | ||| | | ||| | || || || ||||||||||| Sbjct 20040 TCTACAGGTAAAGAATCACATAAAAAGTTTCTTTCAACATCAACAGCTTCTGATATAATT 20099 Query 18910 GATACAACTCTATCTTCATTAGGAGGGTATAG--AAGATGTTTAAACATCAAACATGCAA 18967 | |||||| ||| | | || | ||| |||| | || ||||| |||| Sbjct 20100 TGTTGTACTCTAGAA--ATTGGTAATTTAAATTTAAGTGATTTATAAATTAAACAAGCAA 20157 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 |||| ||||| || || || | ||| || ||||||||||||||||| | |||||||| Sbjct 20158 AATCTGCATGTAAACCTTCATCACGACTAATTAATTCATTAGAAAATGTAAGACCAGGCA 20217 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 | | ||| | |||||||||||| ||||||| | || |||||||| || ||||||| Sbjct 20218 TTAATCCACGTTTTTTTAACCAAAATATAGCACAGAAACTACCAGAAAATAAAATACCTT 20277 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | ||||| || ||| || |||||| || | | ||||||||| ||||||| Sbjct 20278 CAACTGCACAGAATCCAATTAATCTTTCAGCAAATGAACGATCATTATT---CATCCATT 20334 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTAC-ACATGGCATTGTCTCTATAGAATTAAATAGA 19206 | |||||| || || || ||||| || ||| || | ||||| | ||||| Sbjct 20335 TTGTTGCCCATTCTGCTTTTTTTTTAACTGCATCAACATGAGT-TATAGCTTCAAATA-- 20391 Query 19207 TACAT---ACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 |||| ||| || | |||| | | |||| |||||| | ||| || |||| Sbjct 20392 -ACATTTGACGTTCCTTAATATCACTTATATATTGATCTATAAGTAATGAATAAGTTTCA 20450 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 || || | ||| |||||||| |||||| | ||| | ||||||||| || || ||| Sbjct 20451 TTGTGTATTTGTTCAATAGCCATTTGAAATGCATAATACATTCTTGCTTCAGTAATTTGT 20510 Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 | ||| || |||| || | | | |||||| |||| ||||||||||| || |||||| Sbjct 20511 ATTTCTCTTAAAAAATTTACAGCAAGATTTTCCATAACAATTCCATCACTTGCAGCAAAA 20570 Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTC---ATCTGAGGTTAATGTATTCCAATCA 19440 ||||| | |||| |||||||||||||||||| |||| |||| | |||||| Sbjct 20571 AATGCAAGAACATATTTAATAAAATGTTTTTCAGGATCT---TTTAAACTTCCCCAATCT 20627 Query 19441 TTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTA 19500 | || |||| | |||||| | ||||||| || |||||||||||| || |||||||| Sbjct 20628 CTCATGTCTTGACTTAAATCAATTTCTTCAGCTACCCAAAAAGAAGCTTCAGCTTTTTTG 20687 Query 19501 TACAT 19505 ||||| Sbjct 20688 TACAT 20692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107781177800