Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq141 246 4e-60 >seq141 Length=88262 Score = 246 bits (272), Expect = 4e-60 Identities = 588/875 (67%), Gaps = 23/875 (3%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 |||||| ||| |||||||||| ||||||| | |||| |||||||| || || |||| Sbjct 19847 CATAACACCCGCCATTTGATATTCACCAACTCTTTTTTCAAAAAAATTAGTTTTACCTTG 19906 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGT---ACTA-C 36987 || || || ||||| ||||||| ||||||| ||| ||||| | | || | Sbjct 19907 AAGAGAAATCAAATCCATCCAATCAAAAGGATTAGTAACATTGTATATTTTTGAAATATC 19966 Query 36988 ATGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCAT 37047 | || | | | || | |||| || |||||||| || |||| ||| ||| | Sbjct 19967 AAGAGCAAC---TAATAATC-TATCAGCTACAAATTCAATATATTGTGTCATAAGTCTAG 20022 Query 37048 AGTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCT-ATTATT 37106 | || |||||||| || | ||| || | | ||| | ||| ||||| | | | || Sbjct 20023 AATTCATACCAATAAGATCTACAGGTAAAGAATCAC--ATAAAAAGTTTCTTTCAACAT- 20079 Query 37107 ACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATAT---TTTAAAT-A 37162 || || ||| |||| | ||| || | | || || | ||||| | | Sbjct 20080 -CAACAGCTTCTGATATAATTTGTTGTACT-CTAGAAATTGGTAATTTAAATTTAAGTGA 20137 Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 |||| | | |||||| |||||||| ||||||||||||||| | ||| || |||||||| Sbjct 20138 TTTATAAATTAAACAAGCAAAATCTGCATGTAAACCTTCATCACGACTAATTAATTCATT 20197 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282 |||||| || | || |||||||| || | |||||| | ||||||||| || ||| Sbjct 20198 AGAAAATGTAAGACCAGGCATTAATCCACGTTTTTTTAACCAAAATATAGCACAGAAACT 20257 Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342 |||||||| ||||||||||||||||| ||| | | | | | | | || ||| Sbjct 20258 ACCAGAAAATAAAATACCTTCAACTGCACAGAATCCAATTAATCTTTCAGCAAA---TGA 20314 Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAAC-ACATTCAATTG 37401 || || || | ||||||||| ||| ||| ||||| ||| |||||| ||| | || Sbjct 20315 ACGATCATTATTCATCCATTTTGTTGCCCATTCTGCTTTTTTTTTAACTGCATCAACATG 20374 Query 37402 TTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTA 37461 | || |||| || | | | ||| | | |||| ||||||| ||| || | Sbjct 20375 AGT-TATAGCTTCAAATAACATTTGACGTTCCTTAATATCACTTATATATTGATCTATAA 20433 Query 37462 GTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACC 37521 |||| ||| ||||| ||| || | ||||||||| || ||||| ||||| | | Sbjct 20434 GTAATGAATAAGTTTCATTGTGTATTTGTTCAATAGCCATTTGAAATGCATAATACATTC 20493 Query 37522 TAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCC 37581 | ||||||| | ||| | || | ||||| | ||| | ||||| |||| || | Sbjct 20494 TTGCTTCAGTAATTTGTATTTCTCTTAAAAAATTTACAGCAAGATTTTCCATAACAATTC 20553 Query 37582 CATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATA 37641 ||||||| || ||||| || |||||||||||||| ||||||||| ||||| || | || Sbjct 20554 CATCACTTGCAGCAAAAAATGCAAGAACATATTTAATAAAATGTTTTTCAGGATCTTTTA 20613 Query 37642 ATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTG 37701 | || |||||| | || |||| |||||||| ||| ||| | ||||||| | Sbjct 20614 AACTTCCCCAATCTCTCATGTCTTGACTTAAATCAATTTCTTCAGCTACCCAAAAAGAAG 20673 Query 37702 CCAATGCACGTTTATACATCGTCCAAATATCATTA 37736 | || ||| ||||| | |||||| || ||| Sbjct 20674 CTTCAGCTTTTTTGTACATTGACCAAATTTCTTTA 20708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592315726425800