Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq120 176 4e-39 seq130 161 8e-35 >seq120 Length=60016 Score = 176 bits (194), Expect = 4e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||||||||||||||| | ||||||||||| || ||||| ||||| | Sbjct 31636 CCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCAGAT 31577 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| |||||||| || ||||||||||| ||||| |||||||| || ||| Sbjct 31576 AAAGTACGACCATCTTCCAATTGTTTCCCTGCAAATATTAAACGTTGTTGATCAGGAGGA 31517 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||||||||||||| ||| ||| |||| | || || || | |||||| Sbjct 31516 ATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCCACC 31457 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| ||||| || || | || || ||||| || ||||| Sbjct 31456 TCTAATGTGATAGTTTTCCCTGTAAGTGTCTTAACAAAAATTTGCAT 31410 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||||||||||||||| | ||||||||||| || ||||| ||||| | Sbjct 31864 CCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCAGAT 31805 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| |||||||| || ||||||||||| ||||| |||||||| || ||| Sbjct 31804 AAAGTACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGAGGA 31745 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||||||||||||| ||| ||| |||| | || || || | ||| ||| Sbjct 31744 ATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCTACT 31685 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | || | || || || || | ||| || ||||| || ||||| Sbjct 31684 TCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 31638 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||||||||||||||| | ||||||||||| || ||||| ||||| | Sbjct 32092 CCACCTCTAAGACGTAAAACTAAATGTAAAGTAGATTCTTTCTGAATATTATAATCAGAT 32033 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| |||||||| || ||||||||||| ||||| |||||||| || ||| Sbjct 32032 AAAGTACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGAGGA 31973 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||||||||||||| ||| ||| |||| | || || || | ||| ||| Sbjct 31972 ATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCTACT 31913 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | || | || || || || | ||| || ||||| || ||||| Sbjct 31912 TCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 31866 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | || ||||| | || |||||||| || ||||| ||||| | Sbjct 32320 CCACCTCTAAGACGCAGGACCAAATGTAAAGTGGATTCTTTCTGAATATTATAATCAGAT 32261 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| |||||||| || ||||||||||| ||||| |||||||| || ||| Sbjct 32260 AAAGTACGACCATCTTCCAATTGTTTTCCTGCAAATATTAAACGTTGTTGATCAGGAGGA 32201 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| ||||||||||||||| ||| ||| |||| | || || || | ||| ||| Sbjct 32200 ATACCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCTACT 32141 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | || | || || || || | ||| || ||||| || ||||| Sbjct 32140 TCTAATGTAATAGTCTTTCCTGTAAGAGTCTTAACAAAAATTTGCAT 32094 >seq130 Length=374773 Score = 161 bits (178), Expect = 8e-35 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||| ||| | ||||||||| || || ||||| || || | | ||||||| |||| ||| Sbjct 265118 ACTAGATGTAAGGTAGATTCCTTCTGAATATTATAGTCCGAAAGAGTTCTGCCATCTTCC 265059 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| ||||| ||||| ||||||||||||||||| || ||||| || || || || ||| Sbjct 265058 AATTGTTTACCAGCAAAGATCAAACGCTGTTGATCAGGAGGAATTCCCTCCTTGTCCTGA 264999 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| |||| | ||| ||||| | || || || | ||| | || ||| Sbjct 264998 ATCTTAGCTTTGACATTTTCAATAGTATCAGAGGGCTCGACCTCCAAAGTAATGGTCTTG 264939 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || |||| ||||||||||| |||||||| Sbjct 264938 CCTGTTAGTGTTTTTACAAAGATCTGCAT 264910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396277699701765