Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq130 98.7 8e-16 seq120 82.4 6e-11 >seq130 Length=374773 Score = 98.7 bits (108), Expect = 8e-16 Identities = 165/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 28552 AAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTT 28611 ||||||| || |||||||||||| |||| || || |||||||| || || || | Sbjct 264908 AAATGCAGATCTTTGTAAAAACACTAACAGGCAAGACCATTACTTTGGAGGTCGAGCCCT 264967 Query 28612 CAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 | || || | | || |||| || || | || ||||| |||||| | || ||| Sbjct 264968 CTGATACTATTGAAAATGTCAAAGCTAAGATTCAG-GACAAGGAGGGAATTCCTCCTGAT 265026 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 |||||| | | |||||||| || ||||||||||||||| | |||| | | || ||| Sbjct 265027 CAACAGCGTTTGATCTTTGCTGGTAAACAATTGGAAGATGGCAGAACTCTTTCGGACTAT 265086 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAAT 28786 || ||||| || |||||||| | || | ||| | ||| | |||| || |||| Sbjct 265087 AATATTCAGAAGGAATCTACCTTACATCTAGTACTGAGACTTAGAGGTGGTGTAAT 265142 >seq120 Length=60016 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || ||| | || || ||||| || || || |||||| ||| Sbjct 31410 ATGCAAATTTTTGTTAAGACACTTACAGGGAAAACTATCACATTAGAGGTGGAACCATCA 31469 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || ||||||| || || || || || | || ||||| Sbjct 31470 GATACAATTGAAAATGTTAAAGCAAAAATTCAA-GATAAGGAAGGTATTCCTCCTGATCA 31528 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | || ||||| || ||||||||||||||| | ||| | | |||||||| Sbjct 31529 ACAACGTTTAATATTTGCAGGGAAACAATTGGAAGATGGTCGTACTTTATCTGATTATAA 31588 Query 28733 CATTCAAAAAGAATCTACT 28751 ||||| |||||||||||| Sbjct 31589 TATTCAGAAAGAATCTACT 31607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425404048229955