Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptosporidium_20baileyi_20[genbank_20GCA_5F001593455.1_202016-03- 17] 145 sequences; 8,493,640 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq129 172 3e-38 >seq129 Length=387383 Score = 172 bits (190), Expect = 3e-38 Identities = 324/472 (69%), Gaps = 6/472 (1%) Strand=Plus/Plus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 |||||| | |||||||||||||| |||| ||| | ||| || | ||| | |||| Sbjct 182719 TCAACTCTTTCCATAAATAAATCGGGAACCCATAGAGCAGGGAAAAGATCACGGCATCTC 182778 Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCAT 26041 |||||||| || || ||||| ||| | | |||| ||| |||| || ||| ||||| Sbjct 182779 ATTTCTTCCTTGCCATGATTTTTTCTGATTTCTATGAATTCAACAACATCAACATGCCAA 182838 Query 26042 GGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTT 26101 || || || || || |||| || ||||| ||||| |||||||| || | |||||| Sbjct 182839 GGCTCCAAGTATATTGCAATCGCTCCCTTTCTCTTTCCCCCACCTTGGTCGATATATCTT 182898 Query 26102 GCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTA 26161 ||||| ||||| |||| | |||||||| || ||| |||| ||| || || | Sbjct 182899 GCAGTATCATTATAAACACGTAGCATTGGAATCAAACCATTTGACCTTCCATTAGTACCT 182958 Query 26162 TGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCAT 26221 || | |||||||| | ||||| | |||||| | ||||||||| | Sbjct 182959 CTTATATAAGATCCTGTACCACGAATATTACTCACCGCAATACCTAGCCCACCAGCCGTT 183018 Query 26222 TTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTC 26281 || |||| ||| || | || | ||||| || ||||| ||||| | | | | Sbjct 183019 TTGCTAATATTTGCGCACTTTGTCAAAGTATCAAAGATTCCATTTAT-CGAGTCCTCCGC 183077 Query 26282 ATTCCTAA-TAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGT 26340 | |||||| ||| |||||||| || | || | | ||| || |||| ||||||||| || Sbjct 183078 AATCCTAAGTAAGAAACAAGAGGACATCTGTGGACGAGGAGTACCTGCATTAAATAAAGT 183137 Query 26341 CGGTGTAGCATGAGTATAATATCCTTCACTCAAAGCTGT--ATAAGTTTCAA 26390 ||| || ||||||||| |||| |||| | | ||| || |||||| |||| Sbjct 183138 CGGCGTGGCATGAGTAAAATA--CTTCTGTGATAGCAGTTCATAAGTCTCAA 183187 Score = 100 bits (110), Expect = 1e-16 Identities = 327/495 (66%), Gaps = 20/495 (4%) Strand=Plus/Plus Query 24695 GTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGAT 24754 ||||| | ||||| || || || || | || ||||| || ||||||||||| || Sbjct 181519 GTTCTTAAGTAATATATCCCCGTCTTAAGACCTTTTTTCCAGCCATAAAAATGCATAGAA 181578 Query 24755 GTTAGTTTTGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCAAACA 24814 | || || |||| || || ||| | | | |||| ||||||| ||||||| | Sbjct 181579 GAAAGCTTCGCAAAATTCGCATTTTCCATATGTATATTCAGAGATTGAGACTGGCAAATA 181638 Query 24815 AAACGTTGTCTATCTGCAGCTAAGTCAATGATCG--TTTTCATCGATATATCGTAAGCTG 24872 || || ||||||||| || | |||||| | | |||| | ||| | | || ||| Sbjct 181639 TAAGGTCCTCTATCTGCTGCCATGTCAATTACTGACTTTTGTTTGATTTCCC--AAACTG 181696 Query 24873 TTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAA--CTGATCCATT 24930 |||| ||| | | ||| || |||||||| | |||||||||| ||| || || Sbjct 181697 TTTTATATAAATTTCGTATATCTTCTGGAATACAATCTATATTTTGAATACTG--CCGTT 181754 Query 24931 TTCTCTCAAT-AGATTCAATCTCATATTCGGTG--TCCA-AAGATTAATTTTTTCAAGAT 24986 | | |||| | |||| | | | | || | |||| || || | |||| | Sbjct 181755 GT-TAGCAATTATATTCTGTTTGAGA--CGATCATTCCATAATCCTAGCTCGAGCAAG-T 181810 Query 24987 CTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGATA 25046 | | | | ||| ||| | ||| | ||| || || || | |||||| | ||||| Sbjct 181811 CATTCAGGAGATGTGGATTCACGATGAAAAACTCGCCGGATAGAACTCTACGA--TGATA 181868 Query 25047 AGT--TTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGC 25104 | | |||| || || || || |||| |||||||||||| || || ||||| |||||||| Sbjct 181869 AATATTTGACGTAAAAGGCTCGAAACTTTCATTATTTCCCAATATCTGAGAGGTAGATGC 181928 Query 25105 TGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTT 25164 ||| ||||| ||| | ||||| |||||||| | |||| || |||| |||||| Sbjct 181929 TGTGGGCATAGGTGCCAATAATAAGGAATTTCTTAGTCCATGCTTGGAGATCTTTTGTTT 181988 Query 25165 TAATTTATCCCAATC 25179 | | |||||||| Sbjct 181989 AAGTAGGTCCCAATC 182003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039552830875